Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650135.1_202016-05-23] 131 sequences; 6,438,007 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq67 109 5e-19 seq35 102 8e-17 >seq67 Length=197426 Score = 109 bits (120), Expect = 5e-19 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--GT 139610 || |||||||||| ||| || || ||||| ||||||||||| | | ||| ||| || Sbjct 118674 AACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATC--TGAAAGTGTACGACCGT 118617 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 | || | ||||| |||||| | || || ||||| |||||||| || || || || |||| Sbjct 118616 CCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGT 118557 Query 139671 CGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 | ||| | || | |||| | ||| | || || | || |||||||||| ||| | Sbjct 118556 CT-TGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATG 118498 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || | |||||||| ||||||||||| Sbjct 118497 GTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 118463 >seq35 Length=66782 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || ||||| | ||| || || || | ||||||||||||||||| || || || | Sbjct 28636 CCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGAC 28695 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| || || ||||||||| | ||||| ||||| ||||| || || Sbjct 28696 AGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGGA 28755 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || || || ||| | || | ||| | | ||| | || || ||||||| || Sbjct 28756 ATTCCCTCCTTATC-CTGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTAC 28814 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAG 139766 || | || | || || || || | ||||| || ||||||||||||| Sbjct 28815 TTCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCATAG 28864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063187695200