Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650135.1_202016-05-23] 131 sequences; 6,438,007 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq29 183 4e-41 seq55 114 2e-20 >seq29 Length=96100 Score = 183 bits (202), Expect = 4e-41 Identities = 640/989 (65%), Gaps = 30/989 (3%) Strand=Plus/Plus Query 79438 TCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCT 79497 || |||||||| ||||| || | ||| || || ||||||||||| |||||| |||||| Sbjct 82388 TCAGCTAATCCCTGAACTCCTACACCTATTGGCCTATGTCTCTTGTTAGAATATTCAGCC 82447 Query 79498 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTG 79557 || |||| ||| |||||||| ||||||||| |||| | ||| | || ||| Sbjct 82448 TCAGGAACAGGGTAATAATTCTCGTCTATAATTCTATTCAAATTGAAAGTAAGTATCTTG 82507 Query 79558 ACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCA----TCTA----TTACAAACATGT 79609 || | || | ||| |||||| || | | || ||||| || | Sbjct 82508 CAAGCAGAATGTAATAACTTAAAGTCAAAT--TCGAGAGTTTTAGTGTTTACATACTTTG 82565 Query 79610 TCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTA 79669 ||| || | || || || ||||| || || || ||||||| | | |||||| | | Sbjct 82566 GCAATGCTAGTGAAGCGAGGTTACACACTGCAACTTCATTAGGAGATGTATATTGCACAA 82625 Query 79670 TTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGT 79729 | || ||| | ||| ||| ||||||| || |||| || | ||||| ||| | | Sbjct 82626 TCTCGCAGCATAAGTTGCTAGACTTAATAGTACCTATGTTCTTCTGATTTGACTTGTAAT 82685 Query 79730 TACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCG 79789 |||| || ||||| || | ||| | ||||| || |||||||| || |||| || || | Sbjct 82686 TACAAGCGTCCTTGTATAACATGTAAGGAGTTCCTGTTTCAATTTGCGATTGTAAGATAG 82745 Query 79790 CTTTCCAGACGACTCGAGC-----CTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTA 79844 | ||| | | | | || || | || ||| | || | ||| | || Sbjct 82746 CAAACCAAAGGGTTTGCGCGGGAACTGTTTTGC-GACCCATGCCTTTCGACTCATAACTA 82804 Query 79845 TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTC 79904 ||| ||||| ||| || || ||||||||||| | |||| ||| ||| || || Sbjct 82805 GTGT----ATAATTTTTCAAATTCCTCTCCCCAAACCTGATCTAGTCCTCTACACTCATC 82860 Query 79905 AGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAAT 79964 || |||||||| | ||| | | ||| | | | || | |||||| || || || || || Sbjct 82861 TGGGCACATCAAAGTCCAGTTTTCATTAGCTTCAACCCTTTTCATGAAAAGGTCTGGGAT 82920 Query 79965 CCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAA 80023 ||| | || ||| || | || || | || |||||| || || ||| | Sbjct 82921 CCACAATGC-ATAGAACAAGTCCCTAGCCCTTGACTCCTCTGAACCATGGTTTTTTCGTA 82979 Query 80024 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCG 80083 |||| ||||| | | |||||||| |||||| || || | ||| ||||| | || Sbjct 82980 GATCTAGGAATTCAAAAATATCAGCATGCCATGGCTCTAGGTAGATGGCAAATGAACCTT 83039 Query 80084 GTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 80143 || ||| ||||||||||| | || | ||| || | ||| | | ||| | ||| | Sbjct 83040 TTCTTTTTCCCCCTCCCTGATCAACATAACGAGCAGTATCATTGAATATTCTGAGCATAG 83099 Query 80144 GAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACT---GGCACGAA 80200 | ||||| |||||||| ||||| || ||| || || | ||| |||||| | Sbjct 83100 GTATAATCCCATTGGAATGCCCATTTGTGCCGCGAATGTA---TGAACTGGAGGCACGTA 83156 Query 80201 TATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 80260 | || |||| || |||||| || ||||| | ||| || | ||| ||| | | | Sbjct 83157 TTTTGTGTATTGCTAAACCTATCCCTCCTGCTGTCTTACTAATGAGTGCACATTGGGTAA 83216 Query 80261 ACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACA 80320 || ||| | || || || |||||| | || | ||| || || |||||||||| Sbjct 83217 GGGTGTCAAAAATACCAGAAATAGAATCATCCTTAATATCAAGAAGGAAGCAGCTAGACA 83276 Query 80321 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 80380 |||| || ||||||| | || || | || |||| ||||| |||| |||| | Sbjct 83277 TTTGAGGAAATTTAGTTCCAGAGTTGAAGAGTGTGGGAGTGGCGTGGATAAATAATTTCT 83336 Query 80381 CAGACA-GTAGATTGTACGTCTCAATAGC 80408 |||| ||| |||||| ||||| || || Sbjct 83337 TGGACATGTA-ATTGTAAGTCTCCATGGC 83364 >seq55 Length=91196 Score = 114 bits (126), Expect = 2e-20 Identities = 114/144 (79%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 |||| ||||| | || ||| ||| ||||||||||| || |||||||||||||||| Sbjct 50173 ACATATAACATCCAAACTCGGCGTGTAGACCCTCGTCCCTGGAGATTAGTTCGTTGGAAA 50114 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG--ACCC 50069 | || || |||||||| || || || ||||| ||||||||||||| |||| | | |||| Sbjct 50113 AGGTTAGCCCGGGCATGAGCCCGCGTTTTTTCAGCCAAAATATGG-CGCAGAAGCTACCC 50055 Query 50070 AGAAAAGAAGATTCCTTCTACTGC 50093 ||||| || |||||||| ||||| Sbjct 50054 -GAAAATAAAATTCCTTCCACTGC 50032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267623834840