Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650135.1_202016-05-23] 131 sequences; 6,438,007 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq35 105 4e-18 >seq35 Length=66782 Score = 105 bits (116), Expect = 4e-18 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 33140 TCACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCA 33199 || || || | ||| | ||||||||||||||| || ||||||||||| |||||||| || Sbjct 28633 TCTCCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCT 28692 Query 33200 GACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTG 33259 |||| | || | ||| || | |||||| ||| ||| || | ||||| || || | Sbjct 28693 GACAGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGT 28752 Query 33260 GGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGT 33316 || || || || || || |||| ||| || || ||| || || || |||| Sbjct 28753 GGAATTCCCTCCTTATCCTGAATCTTAGCC---TTAACATTTTCGATAGTATCACTGGGC 28809 Query 33317 TGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || |||| || || ||||| ||||| || ||||| || || |||||||| Sbjct 28810 TCTACTTCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCAT 28862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318777091051638