Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650135.1_202016-05-23] 131 sequences; 6,438,007 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq67 131 2e-25 seq35 114 1e-20 >seq67 Length=197426 Score = 131 bits (144), Expect = 2e-25 Identities = 173/238 (73%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 94778 ACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCG 94837 ||||| ||||||| | ||||| ||||| | || ||||||||||| | |||||||| Sbjct 118692 ACTCCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT-- 118635 Query 94838 CTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTG 94895 || | ||||| || ||||||| |||||||| |||| |||| || ||| ||||| | Sbjct 118634 CTGAAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGG 118575 Query 94896 GAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT 94955 | ||||| || || ||||| | ||| || ||||| || | | ||| ||| | | Sbjct 118574 GGGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTT 118515 Query 94956 CGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTAC 95013 | || |||| || |||||||| || ||||| ||||| ||||| || ||||| |||| Sbjct 118514 CCACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATTTTTAC 118457 >seq35 Length=66782 Score = 114 bits (126), Expect = 1e-20 Identities = 170/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 94767 TAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCA 94826 ||||| ||| |||| || | |||| ||||||||| ||||||||||| || ||||| | Sbjct 28622 TAAAAAATTAGTCTCCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAA 28681 Query 94827 CGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || || |||| | || || || || || || |||| || | || || Sbjct 28682 TATTGTAGTCTGACAGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTT 28741 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | ||||| || ||||| || || || || | ||| || ||||| || ||| ||| | Sbjct 28742 GTTGATCAGGTGGAATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTTTCGATAGTAT 28801 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 || | | || || || | ||||||||||| || || || ||||||||||| || |||| Sbjct 28802 CACTGGGCTCTACTTCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCA 28861 Query 95007 T 95007 | Sbjct 28862 T 28862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290465923160