Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650135.1_202016-05-23] 131 sequences; 6,438,007 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq29 178 2e-39 seq55 123 3e-23 >seq29 Length=96100 Score = 178 bits (196), Expect = 2e-39 Identities = 646/996 (65%), Gaps = 44/996 (4%) Strand=Plus/Plus Query 62570 TCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCT 62629 || |||||||| ||||| || | ||| || || ||||||||||| ||||| |||||| Sbjct 82388 TCAGCTAATCCCTGAACTCCTACACCTATTGGCCTATGTCTCTTGTTAGAATATTCAGCC 82447 Query 62630 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTG 62689 || |||| ||| |||||||| ||||||||| |||| | ||| || || ||| Sbjct 82448 TCAGGAACAGGGTAATAATTCTCGTCTATAATTCTATTCAAATTGAAAGTAAGTATCTTG 82507 Query 62690 --ACCACATCCT--TCAGTTTGAGAAAATCAAATCGCCCA--TCTA----TTACAAACAT 62739 | || | | | | || ||| |||||| | | || ||||| || | Sbjct 82508 CAAGCAGAATGTAATAACTT----AAAGTCAAATTCGAGAGTTTTAGTGTTTACATACTT 82563 Query 62740 GTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 62799 |||||| | || || || ||||| || || || ||||||| | | |||||| | Sbjct 82564 TGGCAATGCTAGTGAAGCGAGGTTACACACTGCAACTTCATTAGGAGATGTATATTGCAC 82623 Query 62800 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 62859 ||||| ||| | || ||| |||| || || |||| || | ||||| ||| | Sbjct 82624 AATCTCGCAGCATAAGTTGCTAGACTTAATAGTACCTATGTTCTTCTGATTTGACTTGTA 82683 Query 62860 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 62919 ||||| || ||||| || | ||| | ||||| || |||||||| || |||| || || Sbjct 82684 ATTACAAGCGTCCTTGTATAACATGTAAGGAGTTCCTGTTTCAATTTGCGATTGTAAGAT 82743 Query 62920 CGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT---TCGTA 62976 || ||| | | | | || | | | |||| | | | || | || || Sbjct 82744 AGCAAACCAAAGGGTTTGCGCGGGAACTGT---TTTGCGACCCATGCCTTTCGACTCATA 82800 Query 62977 --TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCA 63034 ||||||||| || ||| || || ||||||||||| | || ||||| ||| ||| Sbjct 82801 ACTAGTGTATA--ATTTTTCAAATTCCTCTCCCCAAACCTGATCTAGTCCTCTACACTCA 82858 Query 63035 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 63094 || || |||||||| | ||| | | | | | | | || | |||||| || || || || Sbjct 82859 TCTGGGCACATCAAAGTCCAGTTTTCATTAGCTTCAACCCTTTTCATGAAAAGGTCTGGG 82918 Query 63095 ATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 63153 ||||| | || ||| || | || || | || ||||| || || ||| Sbjct 82919 ATCCACAATGC-ATAGAACAAGTCCCTAGCCCTTGACTCCTCTGAACCATGGTTTTTTCG 82977 Query 63154 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 63213 ||||| ||||| | | |||||||| |||||| || || | ||| ||||| || | Sbjct 82978 TAGATCTAGGAATTCAAAAATATCAGCATGCCATGGCTCTAGGTAGATGGC---AAATGA 83034 Query 63214 AGGCCGTTTGTTT-----CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63268 | || ||| ||| ||||||||||| | || | ||| || | ||| | | ||| Sbjct 83035 A--CCTTTTCTTTTTCCCCCTCCCTGATCAACATAACGAGCAGTATCATTGAATATTCTG 83092 Query 63269 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGG-- 63326 | ||| || ||||| |||||||| ||||| || || || || | ||||| Sbjct 83093 AGCATAGGTATAATCCCATTGGAATGCCCATTTGTGCCGCGAATGTA---TGAACTGGAG 83149 Query 63327 -CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63385 |||| || || |||| || |||||| || ||||| | ||| || | ||| ||| Sbjct 83150 GCACGTATTTTGTGTATTGCTAAACCTATCCCTCCTGCTGTCTTACTAATGAGTGCACAT 83209 Query 63386 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 63445 | | | || ||| | || || ||| ||||||| | || | ||| || || ||| Sbjct 83210 TGGGTAAGGGTGTCAAAAATACCAGAAATAGAATCATCCTTAATATCAAGAAGGAAGCAG 83269 Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 ||||||||||| || ||||||| | || || | || |||| ||||| |||| Sbjct 83270 CTAGACATTTGAGGAAATTTAGTTCCAGAGTTGAAGAGTGTGGGAGTGGCGTGGATAAAT 83329 Query 63506 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGC 63540 |||| | || | ||| |||||| ||||| || || Sbjct 83330 AATTTCTTGGACATGTA-ATTGTAAGTCTCCATGGC 83364 >seq55 Length=91196 Score = 123 bits (136), Expect = 3e-23 Identities = 116/145 (80%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 |||| ||||| | || ||| ||||||||||||||| || |||| ||||||||||| Sbjct 50173 ACATATAACATCCAAACTCGGCGTGTAGACCCTCGTCCCTGGAGATTAGTTCGTTGGAAA 50114 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 32771 | || || |||||||| || || || ||||| ||||||||||||| |||| | | | || Sbjct 50113 AGGTTAGCCCGGGCATGAGCCCGCGTTTTTTCAGCCAAAATATGG-CGCAGAAGCTACCC 50055 Query 32772 GAAAAGAAAATTCCTTCTACTGCCG 32796 ||||| ||||||||||| ||||||| Sbjct 50054 GAAAATAAAATTCCTTCCACTGCCG 50030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630962427600