Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650135.1_202016-05-23] 131 sequences; 6,438,007 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq29 118 1e-21 seq68 86.0 7e-12 >seq29 Length=96100 Score = 118 bits (130), Expect = 1e-21 Identities = 322/487 (66%), Gaps = 7/487 (1%) Strand=Plus/Plus Query 106784 TCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGA 106843 ||||||| ||||||||||||||||| ||||||| | | || | || ||| || Sbjct 82892 TCAACCCTTTTCATGAAAAGGTCTGGGATCCACAATGCATAGAACAAGTCCCTAGCCCTT 82951 Query 106844 GCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCAT 106903 | ||| || ||| ||||| ||||| || ||||| || | ||||| || |||||| Sbjct 82952 GACTCCTCTGAACCATGGTTTTTTCGTAGATCTAGGAATTCAAAAATATCAGCATGCCAT 83011 Query 106904 GGCTCAAGATAGACTGCGATAGATCCCTTTC---GACGCCCAGCTTGATTTACATAGCGC 106960 ||||| || |||| || | || || |||| | ||| | |||| ||||| || Sbjct 83012 GGCTCTAGGTAGATGGCAAATGAACCTTTTCTTTTTCCCCCTCCCTGATCAACATAACGA 83071 Query 106961 GCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCC 107020 || || | || |||| | ||||| || ||||| |||| || || |||||||| || Sbjct 83072 GCAGTATCATTGAATATTCTGAGCATAGGTATAATCCCATTGGAATGCCCATTTGTGCCG 83131 Query 107021 CGAATACGAGATTTATTGGCTCTCACATCATGGATGTGC-ATCCCAATACCCCCAGCCCA 107079 ||||| || | ||| | | | || || ||| | || || || || || Sbjct 83132 CGAATGTATGAACTGGAGGCACGTATTTTGTGTAT-TGCTAAACCTATCCCTCCTGCTGT 83190 Query 107080 CTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTT 107139 ||| || | ||||| | ||||| || || | ||||| || || || ||||| Sbjct 83191 CTTACTAATGAGTGCACATTGGGTAAGGGTGTCAAAAATACCAGAAATAGAATCATCCTT 83250 Query 107140 GTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGT 107199 | | | ||||||||| || ||||| || || | || |||| |||||||| || Sbjct 83251 AATATCAAGAAGGAAGCAGCTAGACATTTGAGGAAATTTAGTTCCAGAGTTGAAGAGTGT 83310 Query 107200 TGGTGTTGCGTGAATGAA-CATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAAT 107258 || || ||||| || || || ||| |||||| | | ||| ||||||| | || || Sbjct 83311 GGGAGTGGCGTGGATAAATAATTTCTT-GGACATGTAATTGTAAGTCTCCATGGCACGAT 83369 Query 107259 CAATGTC 107265 |||| || Sbjct 83370 CAATATC 83376 >seq68 Length=32546 Score = 86.0 bits (94), Expect = 7e-12 Identities = 282/428 (66%), Gaps = 18/428 (4%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 || || ||||| | ||||| || |||| || ||||| | ||||| | || || ||| Sbjct 15593 TCTAGTATATCTGCACGATTAGTACCGGCCATCACAACTACACCTGATG-ATGATTTAAA 15535 Query 9285 -CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG-----CT 9338 |||||||| ||| ||||| ||| || | || | ||||| |||||| || | | Sbjct 15534 GCCATCCATTTCTACCAAAATTTGATTTAATGTATTTTCCCTTTCATCGTTAGAACCACC 15475 Query 9339 GGCATA-CCACCAG-CACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAA 9396 |||| | || || | || | || ||| || | |||||| || |||||||| |||| | Sbjct 15474 GGCAAAGCCTCCTCTCGCT-CTTTTCTTACCAATGGCATCTATTTCATCAATAAAGATTA 15416 Query 9397 TACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 | | || ||||| | || | ||||| ||||| | || | ||| ||| | || Sbjct 15415 TTGAAGGGGCATTTTTTCTAGCATTCTCAAATAGATCCCTTACACGACTGGGGCCGATAC 15356 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGAT-GAAGGGGACATTAGATTCA 9515 |||| || | ||| | || | || | || || | | ||| || || | | ||| Sbjct 15355 CAACGAATACCTCAATGAAATCTGATCCAGAT-ATGGAGTAGAATGGAACTTGGGCTTCC 15297 Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9575 || |||| || ||| ||||| || ||||||||||| || || || || || Sbjct 15296 CCGGCAACAGCCTTGGCAAGAAGCGTTTTACCCGTACCAGGAGGTCCACAAAGCAGTGCG 15237 Query 9576 CCCCGTGGAATCTTGGCGCC---ACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCC 9632 || ||| || |||||||| |||| || |||| || || | ||||||||||| Sbjct 15236 CCTTTTGGTATTTTGGCGCCCAAACTTTTAA---ATCTTTCTGGATTTTTGAGAAAATCT 15180 Query 9633 ACAATCTC 9640 |||| ||| Sbjct 15179 ACAAACTC 15172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979833906440