Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650135.1_202016-05-23] 131 sequences; 6,438,007 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq67 120 7e-22 seq35 107 4e-18 >seq67 Length=197426 Score = 120 bits (132), Expect = 7e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || || || || | |||||| || || || ||||| || || ||||| | ||| || Sbjct 118684 TCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGT 118625 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || || || | || || || || || || ||||||||||| || || ||||| || Sbjct 118624 ACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCC 118565 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||||||||| || ||| || || ||||| || || | |||||| ||||| Sbjct 118564 CTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAG 118505 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| | || || || || | |||||||| || | |||||||| Sbjct 118504 GGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATTT 118461 >seq35 Length=66782 Score = 107 bits (118), Expect = 4e-18 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 |||||| || | || | ||| |||||||||||||||||||| || | ||||| | || Sbjct 28647 TCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGACAGAGTGCGGCC 28706 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 ||||| || |||||||| || || || ||||||||||| || || ||||| || || || Sbjct 28707 GTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGGAATTCCCTCCTT 28766 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGT 195101 || ||||| || ||| || || || || || || ||| || ||||| | || Sbjct 28767 ATCCTGAATCTTAGCCTTAACATTTTCGATAGTATC---ACTGGGCTCTACTTCCAATGT 28823 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| || || | |||||| Sbjct 28824 GATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCAT 28862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109479737804477