Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650135.1_202016-05-23] 131 sequences; 6,438,007 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq118 201 9e-46 seq125 111 1e-18 >seq118 Length=223543 Score = 201 bits (222), Expect = 9e-46 Identities = 382/552 (69%), Gaps = 29/552 (5%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||||| || || ||||| |||||||| || |||||||| |||||| |||||| | Sbjct 82901 GCTATTGGGATTGATTTGGGAACCACTTACTCATGTGTTGGCGTTTGGAAAAATGAAACT 82842 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || |||||||| |||||||||||||| ||| | || ||||| ||||||||| | ||||| Sbjct 82841 GTAGAAATTATAGCCAATGATCAAGGCAACCGTACAACTCCGTCTTATGTTGCCTTCACT 82782 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || | || ||||| || || || ||| |||| | || | |||||| || Sbjct 82781 GATGTGGAGCGATTGGTTGGCGACGCCGCCAAAAATCAGGATGCTAGAAATCCTGAAAAC 82722 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTG--TTCAGG 550229 || |||||||||| ||| | || || || |||| | |||||| | ||| | || Sbjct 82721 ACAGTTTTTGATGCAAAAAGATTGATAGGGAGAAAGATCAATGATCC--CTGCATCCAAA 82664 Query 550230 CAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG 550289 ||||| || || ||||| || | ||| || ||||| | | || ||| Sbjct 82663 GTGATATAAAACACTGGCCATT---TACTGT---TGCGGCTGGACCAAATGAT----AAG 82614 Query 550290 CTACTCATGAAGG----ATCT----GTTAAAC--AAT--TTTCA-CCAGAACAAATTTCA 550336 | | || |||| || | || |||| ||| || || ||||| |||| || Sbjct 82613 CCTGTGATCAAGGTACAATTTCAGGGTGAAACTAAATCCTTCCACCCAGAGGAAATATCT 82554 Query 550337 TCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTAC 550395 |||||||| | | || ||||| ||| | ||| || |||| |||| | | | Sbjct 82553 TCTATGGTCCTCACCAAGATGAAGGAAATTG-CAGAATCTTATTTGGGAAAGACAATCTC 82495 Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||| || || |||||||| || |||||||| || || ||||| || || ||||| || Sbjct 82494 TAATGCTGTTATCACTGTACCCGCTTATTTTAACGATTCTCAACGACAGGCCACTAAGGA 82435 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||||| |||||||| | |||||| | ||||||||||||||||| |||||||| || Sbjct 82434 CGCTGGTACCATTGCTGGGTTAAATGTTATGCGTATTATCAATGAACCAACTGCTGCCGC 82375 Query 550516 ACTTGCATATGG 550527 | |||| ||||| Sbjct 82374 AATTGCCTATGG 82363 Score = 125 bits (138), Expect = 6e-23 Identities = 420/642 (65%), Gaps = 20/642 (3%) Strand=Plus/Minus Query 551959 CCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGG 552018 |||| |||| ||||| | ||||||| || || || || | | || | |||| Sbjct 82072 CCACGATTGTTGTAGAAGCTATATTTGATGGCATCGACTACAGTTGCAACATCACTAGGG 82013 Query 552019 CCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAA--CCAGTAGAACA 552076 ||| ||| || || | ||| | || | || | |||||| || || ||||| ||| | Sbjct 82012 CCAGATTCGAGGAGCTCTGTGCCGAAATGTTCA--AAAACACTTTAATCCCAGTCGAAAA 81955 Query 552077 AGTTTTAAGAGATTCAAAGATTGATAA-ATCCAAAGTACATGAAATTGTGCTTGTTGGTG 552135 || ||| ||| || | || ||||| | || | | |||||| | || ||||| || | Sbjct 81954 AGCCTTAGCTGATGCAGATATGGATAAGAAGCAGA-TCCATGAAGTGGTACTTGTAGGAG 81896 Query 552136 GATCTACAAGAATTCCTAAAATTCGCGAAATG-TTAAGTTCTTATTTCAATGGTAAAAAA 552194 | || || | || ||||| || | || || ||||| ||| ||||||||| ||| || Sbjct 81895 GTTCGACCCGTATCCCTAAGATACAGCAATTGATTAAGGACTT-TTTCAATGGCAAAGAA 81837 Query 552195 TT----AAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGC 552250 |||| || |||| ||||| || || || |||||||| || || |||| || Sbjct 81836 CCCTGCAAATCAA----TTAACCCAGACGAAGCAGTAGCCTATGGCGCGGCTGTTCAGGC 81781 Query 552251 AGCTATTCTTTCTGGACAAACTGATGAA--AAACTACAAAATATTGTACTTGTAGATGTT 552308 || ||| | |||| | ||| || | || | ||| || | | | ||||||| Sbjct 81780 TGCAATTTTAACTGG-CGAACA-ATCTAGCAAGGTCCAAGATTTACTGTTACTAGATGTC 81723 Query 552309 ACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGA 552368 ||||| || || || || | || || | || ||| ||||||| || || ||| Sbjct 81722 ACTCCACTGTCACTAGGACTTGAGACCGCCGGCGGTGTTATGACCGTGCTGATACCCAGA 81663 Query 552369 AATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACT 552428 ||||||||||| || || || | | |||| | || || | |||| ||||| Sbjct 81662 AATACTACTATCCCCGCCAAGAAGGAACAAGAATTTACAACCAATGAAAATAACCAAACG 81603 Query 552429 GCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTT 552488 | |||| || || | || ||||||||| | | || || || ||| ||| Sbjct 81602 GGGGTTATGATCCAGGTCTTCGAAGGAGAACGTTCTATGACATGTGACAACAATTTACTA 81543 Query 552489 GGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTT 552548 || | || |||| || || ||||||||||| | ||||| || || ||| |||| Sbjct 81542 GGCAAATTCCATTTGACTGGCATACCTCCTGCTCCAAGAGGAGTTCCCCAGATTAAAGTC 81483 Query 552549 ACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 || || || |||||||||||||| || |||| ||| ||||| Sbjct 81482 ACCTTTGACATCGATGCCAATGGTATATTGACAGTGTCTGCT 81441 >seq125 Length=98413 Score = 111 bits (122), Expect = 1e-18 Identities = 131/177 (74%), Gaps = 3/177 (2%) Strand=Plus/Minus Query 550376 TTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCA 550435 ||| | ||||| ||||| |||| || | || || || |||||||||||||| | Sbjct 87929 TTTCTCGGTCAGACAGTTAAAAATGCCGTTGTGACAGTTCCTGCATATTTTAATGATGCC 87870 Query 550436 CAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATC 550495 || || |||||||| |||||||| || | |||||||| | ||||| | ||||| || Sbjct 87869 CAGCGCCAAGCTACCAAAGATGCAGGTCAAATTGCTGGTTTGAATGTATTACGTATACTC 87810 Query 550496 AATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCAAGAA 550552 |||||||| || || ||||| |||| ||||| ||||| | |||| ||| ||||| Sbjct 87809 AATGAACCCACAGCCGCTGCTATTGCTTATGGTCTTGACA---ATAAGGATGAAGAA 87756 Score = 98.7 bits (108), Expect = 8e-15 Identities = 183/270 (68%), Gaps = 9/270 (3%) Strand=Plus/Minus Query 552057 ACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACAT 552116 ||| | ||||||||| | | || |||| | | ||| |||| ||||| | | ||| Sbjct 87395 ACATTGGAACCAGTAAAGGACGTGTTAAACCAAGCCAAGCTTGAGAAATCTGATATCCAT 87336 Query 552117 GAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCT 552176 || || || || |||||||| || || |||||||||||||| | || || | | | Sbjct 87335 GACATAGTTCTAGTTGGTGGGTCAACCAGAATTCCTAAAATCCAGCAATTGATCAAGGAT 87276 Query 552177 TATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGT 552236 | |||||||| ||| | || | || |||| || ||||| ||||||||||| || Sbjct 87275 TTCTTCAATGGCAAAGAGCCCAACAAGGGTATTAACCCTGATGAAGCTGTTGCCTACGGA 87216 Query 552237 GCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTA 552296 || ||| | |||| | ||| ||| |||| || || | || ||| | ||| Sbjct 87215 GCGGCAGTACAAGGCGGTATACTTGCTGGTGAATCTCACGATGAAC---------TGGTA 87165 Query 552297 CTTGTAGATGTTACTCCTCTATCTCTTGGT 552326 ||| | ||||| ||||| ||||| || ||| Sbjct 87164 CTTTTGGATGTGACTCCGCTATCACTGGGT 87135 Score = 93.3 bits (102), Expect = 3e-13 Identities = 153/219 (70%), Gaps = 14/219 (6%) Strand=Plus/Plus Query 361626 AAACATCGAGTGTTCCTGCACCTAAATCATATATGATAATATTCCCCCCGTTTTTATTTT 361685 ||||||| | || || |||| | |||||| | | |||||| ||||| || Sbjct 87710 AAACATCAAAAGTACCACCACCGAGATCATAGACCAAAATATT-------TTTTTCTTCA 87762 Query 361686 TCCAAGTTTTACTTCCAAGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTAT-T 361744 ||| ||| | ||||||||||||| | | ||| ||||| ||||| || | ||| Sbjct 87763 TCC-----TTATTGTCAAGACCATAAGCAATAGCAGCGGCTGTGGGTTCATTGAGTATAC 87817 Query 361745 TTAATAACATTGAGTCCCGCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCA 361804 |||| ||||| | || || |||| ||||||| || ||||| || || |||||| Sbjct 87818 GTAAT-ACATTCAAACCAGCAATTTGACCTGCATCTTTGGTAGCTTGGCGCTGGGCATCA 87876 Query 361805 TTAAAATATGCAGGAACAGTAATCACTGCTTTTTCAACT 361843 ||||||||||||||||| || | || || |||| |||| Sbjct 87877 TTAAAATATGCAGGAACTGTCACAACGGCATTTTTAACT 87915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029289072129190