Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650135.1_202016-05-23] 131 sequences; 6,438,007 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq118 219 3e-51 seq125 127 1e-23 seq67 122 6e-22 seq35 122 6e-22 seq41 93.3 3e-13 >seq118 Length=223543 Score = 219 bits (242), Expect = 3e-51 Identities = 390/562 (69%), Gaps = 23/562 (4%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| ||||| |||||||| ||||| |||||| ||||| | |||||| |||||| | Sbjct 82902 TGCTATTGGGATTGATTTGGGAACCACTTACTCATGTGTTGGCGTTTGGAAAAATGAAAC 82843 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 |||||||| || |||||||| ||||| || | ||||| || || |||||| | || || Sbjct 82842 TGTAGAAATTATAGCCAATGATCAAGGCAACCGTACAACTCCGTCTTATGTTGCCTTCAC 82783 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 ||| || | | |||| || || || ||| |||| | ||| ||||||| || Sbjct 82782 TGATGTGGAGCGATTGGTTGGCGACGCCGCCAAAAATCAGGATGCTAGAAATCCTGAAAA 82723 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || |||||||||| ||||||||||| || | || | ||||| || ||||| Sbjct 82722 CACAGTTTTTGATGCAAAAAGATTGATAGGGAGAAAGATCAATGATCCCTGCATCCAAAG 82663 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATAT-ATAGA-- 474624 |||||| || ||||| |||| || || | ||| |||| || ||| Sbjct 82662 TGATATAAAACACTGGCCATTTACTGT------TGCGGCTGG---ACCAAATGATAAGCC 82612 Query 474625 ----AGCAA--TACACG--CAGG-TGAAACTAAACAATTTTCACCGGAACAAATTTCTTC 474675 | ||| |||| |||| |||||||||| || || || |||| ||||| Sbjct 82611 TGTGATCAAGGTACAATTTCAGGGTGAAACTAAATCCTTCCACCCAGAGGAAATATCTTC 82552 Query 474676 AATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGA-AGTAACTG 474734 ||||| | |||| ||||| ||| || || ||| | ||| |||| | | || Sbjct 82551 TATGGTCCTCACCAAGATGAAGGAAATTGCAGAATCTTATTTGGGA-AAGACAATCTCTA 82493 Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || || ||||| || || |||||||| ||||||||||| || || ||||| || | Sbjct 82492 ATGCTGTTATCACTGTACCCGCTTATTTTAACGATTCTCAACGACAGGCCACTAAGGACG 82433 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | ||||| || | |||||| | |||||||| ||||||||||| || |||||| Sbjct 82432 CTGGTACCATTGCTGGGTTAAATGTTATGCGTATTATCAATGAACCAACTGCTGCCGCAA 82373 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| |||||| | || ||||| Sbjct 82372 TTGCCTATGGTATGGACAAGAA 82351 Score = 152 bits (168), Expect = 3e-31 Identities = 437/658 (66%), Gaps = 28/658 (4%) Strand=Plus/Minus Query 475695 TCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTT 475754 |||||||| | || |||||||||||||| || | || || || ||| || ||| || Sbjct 81919 TCCATGAAGTGGTACTTGTAGGAGGTTCGACCCGTATCCCTAAGATAC-AGCAATTGATT 81861 Query 475755 CATCATATTTT-AATGGTAAAAAGTT----AAATGAAAGTGTAAATCCTGATGAAGCTGT 475809 | | |||| ||||| ||| | |||| || | || || || ||||| || Sbjct 81860 AAGGACTTTTTCAATGGCAAAGAACCCTGCAAATCAA----TTAACCCAGACGAAGCAGT 81805 Query 475810 TGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAA---CT 475866 || ||||| || ||||| || || || |||||| | || || || | || || | Sbjct 81804 AGCCTATGGCGCGGCTGTTCAGGCTGCAATTTTAACTGGCGAA-CAATCTAGCAAGGTCC 81746 Query 475867 AAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGG 475926 || || ||| | | || || |||||||| ||| |||| ||||| || | || || Sbjct 81745 AAGATTTACTGT--TACTAGATGTCACTCCACTGTCACTAGGACTTGAGACCGCCGGCGG 81688 Query 475927 GATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATT 475986 ||||||| || || |||||||||| ||||||| ||| || | ||| ||| Sbjct 81687 TGTTATGACCGTGCTGATACCCAGAAATACTACTATCCCCGCCAAGAAGGAACAAGAATT 81628 Query 475987 TTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAA 476046 | | || || |||| ||||| || | ||||| |||| ||||| ||| | Sbjct 81627 TACAACCAATGAAAATAACCAAACGGGGGTTATGATCCAGGTCTTCGAAGGAGAACG--- 81571 Query 476047 ATTCACTAA-AGATAATAACAA---ACTTGGAACTTTTAATCTTGAA-GGTATTCCTCCT 476101 ||| | | | | | ||||| ||| || | || || |||| || || |||||| Sbjct 81570 -TTCTATGACATGTGACAACAATTTACTAGGCAAATTCCAT-TTGACTGGCATACCTCCT 81513 Query 476102 GCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTT 476161 ||||| ||||||||||| || ||| |||| || ||||| || ||||| |||||||| | Sbjct 81512 GCTCCAAGAGGAGTTCCCCAGATTAAAGTCACCTTTGACATCGATGCCAATGGTATATTG 81453 Query 476162 AATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAACTATTACAAACAAT 476221 | || ||||| || || || | |||| | || || ||||||| ||||| | Sbjct 81452 ACAGTGTCTGCTGCCGACAAGTCGACAGGAAAGACTGAACATGTAACTATAACAAATGAC 81393 Query 476222 CGTGGTAGATTTACTGAAGAACAAATTCAACGTATGGTTGATGAAGCCAAAGAGTTTGAA 476281 || ||| || | | || | ||| | | ||||||| |||||| | ||||| Sbjct 81392 AAGGGAAGACTTTCACAGCAAGACATTGATAGGATGGTTGCTGAAGCAGAGAAGTTTAGG 81333 Query 476282 GAAGCTGATAACAAGA-GAAAAGCTGCTATTGATGCAAAGAATGAACTTGAAAATTAT 476338 |||| |||| | |||| ||| || || | |||| | |||||||||||||| || ||| Sbjct 81332 GAAGATGATGAAAAGAAGAAGAGGTG-TGTTGAATCCAAGAATGAACTTGAGAACTAT 81276 >seq125 Length=98413 Score = 127 bits (140), Expect = 1e-23 Identities = 134/176 (76%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || ||||| ||||||||||||||| | || || ||||| || ||||||| Sbjct 87907 ATGCCGTTGTGACAGTTCCTGCATATTTTAATGATGCCCAGCGCCAAGCTACCAAAGATG 87848 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || |||||| ||| | ||||| |||||||| | |||||||| ||||| || || Sbjct 87847 CAGGTCAAATTGCTGGTTTGAATGTATTACGTATACTCAATGAACCCACAGCCGCTGCTA 87788 Query 474855 TTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGAT 474910 |||||||||||||||| || || || ||||| |||| |||| ||| |||| Sbjct 87787 TTGCTTATGGTCTTGACAATAA---GGATGAAGAAAAAAATATTTTGGTCTATGAT 87735 Score = 95.1 bits (104), Expect = 8e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 290823 CAAGACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGAC 290882 |||||||||| | | | ||| ||||| |||||||| | || | |||||||| | || Sbjct 87773 CAAGACCATAAGCAATAGCAGCGGCTGTGGGTTCATTGAGTATACGTAATACATTCAAAC 87832 Query 290883 CTGCAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGA 290942 | ||||||| | | |||| || || ||||| || |||||||||||||| ||||| | Sbjct 87833 CAGCAATTTGACCTGCATCTTTGGTAGCTTGGCGCTGGGCATCATTAAAATATGCAGGAA 87892 Query 290943 CTGTAATAACAGCTTTTTCCACTTTCT 290969 |||| | ||| || |||| ||| ||| Sbjct 87893 CTGTCACAACGGCATTTTTAACTGTCT 87919 >seq67 Length=197426 Score = 122 bits (134), Expect = 6e-22 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || | ||| |||||||||||||| || ||||||||||| || |||||||| |||||| Sbjct 118617 TCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTG 118558 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 ||||||||||| || ||| ||||||||||||| | || |||||||| || Sbjct 118557 TCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATG 118498 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||||| || || || || || || ||||| Sbjct 118497 GTTTTACCCGTAAGTGTTTTTACAAATATTTG 118466 >seq35 Length=66782 Score = 122 bits (134), Expect = 6e-22 Identities = 142/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 480582 TCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAA 480641 ||||| || ||| || || | ||||| | | ||||| |||||||| ||||||||| Sbjct 28672 TCTTTTTGAATATTGTAGTCTGACAGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAA 28731 Query 480642 ATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCT 480701 || || |||||||||||||| |||||||| ||||| || |||||||| || ||| | Sbjct 28732 ATCAGTCGTTGTTGATCAGGTGGAATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTT 28791 Query 480702 TCAATAGTATCAGTGTG-TGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAAC 480760 || ||||||||| || | | | || ||| || || |||||||| ||||| || || || Sbjct 28792 TCGATAGTATCACTGGGCTCTACTTCCAA-TGTGATGGTTTTACCCGTGAGTGTTTTCAC 28850 Query 480761 GAAAATTTG 480769 || ||||| Sbjct 28851 AAATATTTG 28859 >seq41 Length=320476 Score = 93.3 bits (102), Expect = 3e-13 Identities = 155/223 (70%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 296066 TTGAGAGAATTGGAAGATGGATTGATATTAATAATGAATATAAAACAATGGATAAAAATT 296125 |||| |||| ||| |||||| ||||| || | || || || || ||||| ||| ||| Sbjct 216271 TTGAAAGAACTGGTAGATGGGTTGATTTTGACTCGGACTACAAGACGATGGACAAAGATT 216212 Query 296126 TTATGGAATCTGTTATTTGGTCATTTAAACAACTTTATGAAAAGGAAATGATTTTTGAAG 296185 |||||||| ||| ||| || |||||||| ||||| ||| | | | | | | Sbjct 216211 TTATGGAAAGTGTATGGTGGAGTTTCAAACAACTCTATGATAAGAATCTTGTCTATAAGA 216152 Query 296186 GTTATAAAGTTATGCCTTATTCTACTGGTTGCAATACACCATTATCTCATTTTGAGGCAA 296245 ||| || |||||||| || ||| || || ||||||| | ||| |||| ||||| | Sbjct 216151 GTTTCAAGGTTATGCCATACTCTCTTGCCTGTTCTACACCACTTTCTAATTTCGAGGCGA 216092 Query 296246 AACAAAATTATAAAGAGATTATTGATCCATCTGTTACTTGTTG 296288 | | ||||| ||| | | | ||||| || |||| |||||| Sbjct 216091 ATCTTAATTACAAAAATGTGGTAGATCCTTCGGTTA-TTGTTG 216050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268173580774388