Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650135.1_202016-05-23] 131 sequences; 6,438,007 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq29 187 7e-42 seq68 134 4e-26 >seq29 Length=96100 Score = 187 bits (206), Expect = 7e-42 Identities = 492/748 (66%), Gaps = 11/748 (1%) Strand=Plus/Plus Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690 |||| |||||||| ||||| | ||| | ||| || || |||| |||||||| || Sbjct 82616 TATTGCACAATCTCGCAGCATAAGTTGCTAGACTTAATAGTACCTATGTTCTTCTGATTT 82675 Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750 || || |||||||| |||||||||| ||||| || |||||||| || || || | Sbjct 82676 GACTTGTAATTACAAGCGTCCTTGTATAACATGTAAGGAGTTCCTGTTTCAATTTGCGAT 82735 Query 155751 TCCAGAATCTTTAGCCAGAGGT----CACGGGCATTAATTTGCTTGTTGTATCTGCCTTC 155806 | | || | ||| ||| | |||| | | ||||| | || ||||| Sbjct 82736 TGTAAGATAGCAAACCAAAGGGTTTGCGCGGGAACTGTTTTGC--GACCCAT--GCCTTT 82791 Query 155807 CGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGG 155866 ||||||||| | | || | || | ||||| || || | | ||||| Sbjct 82792 CGACTCATAACTAGTGTATAATTTTTCAAATTCCTCTCCCCAAACCTGATCTAGTCCTCT 82851 Query 155867 GCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATAC 155926 |||| ||| ||||| | || | ||| ||| |||| | || | | ||| || | Sbjct 82852 ACACTCATCTGGGCACATCAAAGTCCAGTTTTCATTAGCTTCAACCCTTTTCATGAAAAG 82911 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986 || ||| | |||||||| | |||||| ||| |||||||||| || || || Sbjct 82912 GTCTGGGATCCACAATGCATAGAACAAGTCCCTAGCCCTTGACTCCTCTGAACCATGGTT 82971 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 || ||||| |||| |||||| |||||||| ||| |||||| || || || ||||| Sbjct 82972 TTTTCGTAGATCTAGGAATTCAAAAATATCAGCATGCCATGGCTCTAGGTAGATGGCAAA 83031 Query 156047 ACTACCATTCCTCTTGCCACC---CTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 ||| || || || || || |||||| ||||| |||||||| | |||||| | | Sbjct 83032 TGAACCTTTTCTTTTTCCCCCTCCCTGATCAACATAACGAGCAGTATCATTGAATATTCT 83091 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 |||||||| ||||| ||||||||| ||||| || |||||||| | |||| || | Sbjct 83092 GAGCATAGGTATAATCCCATTGGAATGCCCATTTGTGCCGCGAATGTATGAACTGGAGGC 83151 Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTC 156223 || | || || || || || || || |||| ||| ||| | || |||| Sbjct 83152 ACGTATTTTGTGTATTGCTAAACCTATCCCTCCTGCTGTCTTACTAATGAGTGCACATTG 83211 Query 156224 CTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGA 156283 | | || | |||||||| |||||||||||| | || || || |||| Sbjct 83212 GGTAAGGGTGTCAAAAATACCAGAAATAGAATCATCCTTAATATCAAGAAGGAAGCAGCT 83271 Query 156284 ACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343 | | |||||| | ||||||| |||||| ||||| || || || || ||||| | Sbjct 83272 AGACATTTGAGGAAATTTAGTTCCAGAGTTGAAGAGTGTGGGAGTGGCGTGGATAAATAA 83331 Query 156344 CTTATTAGACATATAATCGTATGTCTCC 156371 || || ||||| |||| ||| |||||| Sbjct 83332 TTTCTTGGACATGTAATTGTAAGTCTCC 83359 >seq68 Length=32546 Score = 134 bits (148), Expect = 4e-26 Identities = 307/455 (67%), Gaps = 8/455 (2%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 ||||| || || || | || |||||||||||||| |||||| || | || || | Sbjct 15626 CTATCGAATCTTCCTGGTCGCACTAATGCTGGGTCTAGTATATCTGCACGATTAGTACCG 15567 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTA 288969 |||| ||||| | | | | | ||||| |||||||| | ||||||||||| Sbjct 15566 GCCATCACAACTACACCTGATGATGATTTAAAGCCATCCATTTCTACCAAAATTTGATTT 15507 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTG-AATCACCCGAATCGCTCCttttttt 289028 | ||| | |||||||||||| || ||||| | | || | | ||||| ||||| || Sbjct 15506 AATGTATTTTCCCTTTCATCGTTAGAACCACCGGCAAAGCCTCCTCTCGCT-CTTTTCTT 15448 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| ||||| ||||| ||||| || || | | || | ||||| ||| ||| | | Sbjct 15447 ACCAATGGCATCTATTTCATCAATAAAGATTATTGAAGGGGCATTTTTTCTAGCATTCTC 15388 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||||| || |||||||| | || | |||||| | | || | || || || | Sbjct 15387 AAATAGATCCCTTACACGACTGGGGCCGATACCAACGAATACCTCAATGAAATCTGATCC 15328 Query 289149 GGATACTTGAAT-GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 |||| | || | ||||| || | ||||| || || || ||| | || ||||| || | Sbjct 15327 AGATA-TGGAGTAGAATGGAACTTGGGCTTCCCCGGCAACAGCCTTGGCAAGAAGCGTTT 15269 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC- 289266 |||| || ||||| ||||| | || | || ||||||| ||| || || || || Sbjct 15268 TACCCGTACCAGGAGGTCCACAAAGCAGTGCGCCTTTTGGTATTTTGGCGCC--CAAACT 15211 Query 289267 -TTATATTTCTCAGGGCTCTTTAAAAATTCTACAA 289300 ||| || | || || | || | ||| ||||||| Sbjct 15210 TTTAAATCTTTCTGGATTTTTGAGAAAATCTACAA 15176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471815129646147