Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650135.1_202016-05-23] 131 sequences; 6,438,007 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq35 102 8e-17 seq67 87.8 2e-12 >seq35 Length=66782 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||||| | ||||||| ||||| || ||| || ||||| || ||||| || Sbjct 28636 CCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGAC 28695 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || || ||||| || || || ||||| || ||||| || | ||| Sbjct 28696 AGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGGA 28755 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || || | ||| | | ||| || || | ||| || Sbjct 28756 ATTCCCTCCTTATCC-TGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTAC 28814 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || ||||||||||| || || || || || || ||||| Sbjct 28815 TTCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCAT 28862 >seq67 Length=197426 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41650 TAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTC 41709 |||||| | || ||||| ||||| || |||||||| || || || || || |||| Sbjct 118675 TAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTC 118616 Query 41710 GTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 || | || || || || || || || || ||||| || | ||||| | ||||||||| Sbjct 118615 CTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTC 118556 Query 41770 CATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCG 41828 ||| | || || | || || ||| || || | |||||||| | ||||| | Sbjct 118555 T-TGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGG 118497 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||||| || || ||||| || || ||||| || Sbjct 118496 TTTTACCCGTAAGTGTTTTTACAAATATTTGCATTTT 118460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303242977200