Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650145.1_202016-05-23] 131 sequences; 6,361,046 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq44 176 5e-39 seq82 123 3e-23 >seq44 Length=96109 Score = 176 bits (194), Expect = 5e-39 Identities = 648/997 (65%), Gaps = 46/997 (5%) Strand=Plus/Plus Query 53528 TCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCT 53587 || |||||||| ||||| || | ||| || || ||||||||||| ||||| |||||| Sbjct 82384 TCAGCTAATCCCTGAACTCCTACACCTATTGGCCTATGTCTCTTGTTAGAATATTCAGCC 82443 Query 53588 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTG 53647 || |||| ||| |||||||| ||||||||| |||| | || || || ||| Sbjct 82444 TCAGGAACAGGGTAATAATTCTCGTCTATAATTCTATTCAAATTGAAAGTAAGTATCTTG 82503 Query 53648 --ACCACATCCT--TCAGTTTGAGAAAATCAAATTGTCCA--TCTA----TTACAAACAT 53697 | || | | | | || ||| ||||||| | | || ||||| || | Sbjct 82504 CAAGCAGAATGTAATAACTT----AAAGTCAAATTCGAGAGTTTTAGTGTTTACATACTT 82559 Query 53698 GTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 53757 |||||| | || || || ||||| || || || ||||||| | | |||||| | Sbjct 82560 TGGCAATGCTAGTGAAGCGAGGTTACACACTGCAACTTCATTAGGAGATGTATATTGCAC 82619 Query 53758 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 53817 ||||| ||| | || ||| |||| || || |||| || | ||||| ||| | Sbjct 82620 AATCTCGCAGCATAAGTTGCTAGACTTAATAGTACCTATGTTCTTCTGATTTGACTTGTA 82679 Query 53818 GTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAAT 53877 ||||| || ||||| || | ||| | || || || |||||||| || |||| || || Sbjct 82680 ATTACAAGCGTCCTTGTATAACATGTAAGGAGTTCCTGTTTCAATTTGCGATTGTAAGAT 82739 Query 53878 CGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT---TCGTA 53934 || ||| | | | || | | | |||| | | | || | || || Sbjct 82740 AGCAAACCAAAGGGTTTGCGCGGGAACTGT---TTTGCGACCCATGCCTTTCGACTCATA 82796 Query 53935 --TAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 53992 ||||||||| || |||||| || ||||||||||| | || | ||| ||| ||| Sbjct 82797 ACTAGTGTATA--ATTTTTCAAATTCCTCTCCCCAAACCTGATCTAGTCCTCTACACTCA 82854 Query 53993 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 54052 || || |||||||| | ||| | | | | | | | || | |||||| || || || || Sbjct 82855 TCTGGGCACATCAAAGTCCAGTTTTCATTAGCTTCAACCCTTTTCATGAAAAGGTCTGGG 82914 Query 54053 ATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 54111 ||||| | || ||| || | || || | || ||||| || || ||| Sbjct 82915 ATCCACAATGC-ATAGAACAAGTCCCTAGCCCTTGACTCCTCTGAACCATGGTTTTTTCG 82973 Query 54112 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCC 54171 ||||| ||||| | | |||||||| |||||| || || | ||| |||| || | Sbjct 82974 TAGATCTAGGAATTCAAAAATATCAGCATGCCATGGCTCTAGGTAGATGGC---AAATGA 83030 Query 54172 AGGCCGTTTGTTT-----CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 54226 | || ||| ||| ||||||||||| | || | ||| || | ||| | | ||| Sbjct 83031 A--CCTTTTCTTTTTCCCCCTCCCTGATCAACATAACGAGCAGTATCATTGAATATTCTG 83088 Query 54227 AACATTGGAATAATACCATTGGA-TGCACCATTGGTCCCGGAGATATAGCTTCCACTGG- 54284 | ||| || ||||| |||||||| ||| ||||| || ||| || || | ||||| Sbjct 83089 AGCATAGGTATAATCCCATTGGAATGC-CCATTTGTGCCGCGAATGTA---TGAACTGGA 83144 Query 54285 --CACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCA 54342 |||| || || |||| || ||||||||| ||||| | ||| || | ||| || Sbjct 83145 GGCACGTATTTTGTGTATTGCTAAACCTATCCCTCCTGCTGTCTTACTAATGAGTGCACA 83204 Query 54343 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 54402 | | | | || ||| | || || ||| ||||||| | || | ||| || || || Sbjct 83205 TTGGGTAAGGGTGTCAAAAATACCAGAAATAGAATCATCCTTAATATCAAGAAGGAAGCA 83264 Query 54403 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 54462 |||||||||||| || ||||||| | || || | || |||| ||||| |||| Sbjct 83265 GCTAGACATTTGAGGAAATTTAGTTCCAGAGTTGAAGAGTGTGGGAGTGGCGTGGATAAA 83324 Query 54463 CCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGC 54498 |||| | || | ||| |||||| ||||| || || Sbjct 83325 TAATTTCTTGGACATGTA-ATTGTAAGTCTCCATGGC 83360 >seq82 Length=91553 Score = 123 bits (136), Expect = 3e-23 Identities = 116/145 (80%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 |||| ||||| | || ||| ||||||||||||||| || |||| ||||||||||| Sbjct 50092 ACATATAACATCCAAACTCGGCGTGTAGACCCTCGTCCCTGGAGATTAGTTCGTTGGAAA 50033 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 24245 | || || |||||||| || || || ||||| ||||||||||||| |||| | | | || Sbjct 50032 AGGTTAGCCCGGGCATGAGCCCGCGTTTTTTCAGCCAAAATATGG-CGCAGAAGCTACCC 49974 Query 24246 GAAAAGAAAATTCCTTCTACTGCCG 24270 ||||| ||||||||||| ||||||| Sbjct 49973 GAAAATAAAATTCCTTCCACTGCCG 49949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720627780880