Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650145.1_202016-05-23] 131 sequences; 6,361,046 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq44 134 1e-26 seq130 122 8e-23 >seq44 Length=96109 Score = 134 bits (148), Expect = 1e-26 Identities = 188/262 (72%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 132879 TCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGTT 132938 || || |||||||| |||| | || ||||||| |||||||||||||| | || ||| Sbjct 81560 TCTACTGTAAACTTGATGGCATCGGCAGCGGGTTGGGTGCGCAAATAATATACTCCAGTT 81619 Query 132939 TTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCACCGAGTAAGTGGGTTCG 132998 || ||| ||||| ||| | |||||||| || || |||| | | || || || | Sbjct 81620 TTTAGTCCTTTCTTCCAGCCATAAAAGTGCATACTAGACAACTTGGCATATGTAGGCTGT 81679 Query 132999 GCGACAAATAAAT--TCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCCA 133056 | || ||||| ||||||||||| ||| || ||||| | | || ||||| |||| Sbjct 81680 TC--CATGTAAATGTTCAGCGATTGAGACTGGTCAATGAAGGCGCCGCGATCGGCTGCCA 81737 Query 133057 TGTTTATTATACACTTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCT 133116 ||| ||||| ||| ||||||||||||| | || ||| | |||||||| | | | Sbjct 81738 TGTCAATTATCGCCTTCTGTTTGATCTCCCATACGGTTTTGTACAGATTCTTTAGCTCTT 81797 Query 133117 GTGGTATTTCGTCAATGTTCTG 133138 |||||||||| || ||||| || Sbjct 81798 GTGGTATTTCATCGATGTTTTG 81819 >seq130 Length=171689 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || |||||||||||||||||||| || | ||||||||||||||||| ||||| || | Sbjct 28833 CCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGAC 28892 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| || || || || || ||||| | || || || || ||||| || || Sbjct 28893 AGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGGA 28952 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || |||||||| || ||| || ||||| | ||||| || || || ||| || Sbjct 28953 ATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTACT 29012 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | ||||| || || || ||||| ||||| || ||||| Sbjct 29013 TCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCAT 29059 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 || ||||| ||||| | || || || ||||| ||||| ||||| | | |||| || Sbjct 140732 CTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATC--TGAAAGTGTACGAC 140789 Query 118584 --TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCT 118641 ||||| | ||||||||||| | || || || || |||||||| || || ||||||| Sbjct 140790 CGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCT 140849 Query 118642 TGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCA 118701 ||||| ||| || || || | ||| | || || | || ||||| | ||| | Sbjct 140850 TGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTA 140909 Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || ||||||||||| || ||||| Sbjct 140910 TGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 140946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829707362652