Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650145.1_202016-05-23] 131 sequences; 6,361,046 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq130 95.1 1e-14 seq82 95.1 1e-14 seq44 95.1 1e-14 >seq130 Length=171689 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| |||||||| || ||||| || || || || ||||| || ||| | || || ||||| Sbjct 140950 AAAAATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACC 140891 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || | | | |||| || || | || |||||||| || | || ||||| Sbjct 140890 TAGTGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGA 140831 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGAT 31366 || || || ||||| || ||||| ||||| ||||| ||| || ||| | || || Sbjct 140830 TCAACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAG--AT 140773 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| ||||| |||||||| ||||| | || | || ||||| || || Sbjct 140772 TATAACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGG 140720 >seq82 Length=91553 Score = 95.1 bits (104), Expect = 1e-14 Identities = 101/131 (77%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 57990 GCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACG 58048 || || ||||| || || |||||||| ||||| |||| || |||||||| |||| ||||| Sbjct 49951 GCAGTGGAAGGAATTTTATTTTCGGGTAGCTTCTGCGCCA-TATTTTGGCTGAAAAAACG 50009 Query 58049 CGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCA 58108 ||| || |||||||| || || ||| |||||| | || || | ||||||||||| || Sbjct 50010 CGGGCTCATGCCCGGGCTAACCTTTTCCAACGAACTAATCTCCAGGGACGAGGGTCTACA 50069 Query 58109 TACTGATTTTG 58119 | || |||| Sbjct 50070 CGCCGAGTTTG 50080 >seq44 Length=96109 Score = 95.1 bits (104), Expect = 1e-14 Identities = 286/434 (66%), Gaps = 12/434 (3%) Strand=Plus/Plus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 || || |||||||||| ||||| | || || |||| |||||| | |||||| | || Sbjct 81557 TTATCTACTGTAAACTTGATGGCATCGGCAGCGGGTTGGGTGCGCAAATAATATACTCCA 81616 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 || || || || ||||||| | ||||| || || | ||| || |||| | ||| Sbjct 81617 GTTTTTAGTCCTTTCTTCCAGCCATAAAAGTGCATACTAGACAACTTGGCATATGTAGGC 81676 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 |||||||| | || | ||| ||| ||| || || || || || |||||||| ||| Sbjct 81677 TGTTCCATGTAAATGTTCAGCGATTGAGACTGGTCAATGAAGGCGCCGCGATCGGCTGCC 81736 Query 22286 ATATTTATCAATG--TACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 || | || | | | | | || | ||||||||||| |||||||| | | | | || Sbjct 81737 ATGTCAATTATCGCCTTCTGTTTGA--TCTCCCATACGGTTTTGTACAGATTCTTTAGCT 81794 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATT---TT 22400 || ||||| ||||| | || | || ||| | || | || || || || Sbjct 81795 CTTGTGGTATTTCATCGATGTTTTGTAAACTTCCATTA-TATGCA--ATTAATTTTTGTT 81851 Query 22401 TAATCGTATCGTTCCACA-AACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACC 22459 | || || ||||| | | || || | |||||| || | | ||| | || || Sbjct 81852 TCATTTGGTCATTCCAGAGATCCAATTG-AACCAAATCATTCAATAAATGGGGATTTACA 81910 Query 22460 ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519 || ||| ||||| || | |||||| || | ||||| ||| | ||| | ||||| ||| Sbjct 81911 ACGAAAAATTCGCCAGAAAGGACGCGACGATAATAAATATTGCAAGTGTAAGGTTCAAAA 81970 Query 22520 GATTCATTGTTTCC 22533 ||||| ||||||| Sbjct 81971 GATTCGCTGTTTCC 81984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765670057520