Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650145.1_202016-05-23] 131 sequences; 6,361,046 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq44 181 1e-40 seq82 105 9e-18 >seq44 Length=96109 Score = 181 bits (200), Expect = 1e-40 Identities = 740/1152 (64%), Gaps = 26/1152 (2%) Strand=Plus/Plus Query 71436 TCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAA 71495 ||||| ||||| ||||| ||||| | ||| | || | || ||| | ||||| Sbjct 82299 TCCATGGTAAATTGTTTCAAAAATTCTGACATTCAATTCACGGGCCTCCTGAGATTCAAA 82358 Query 71496 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCT 71555 ||||| | || || || | || |||||||| ||||| || | ||| || || || Sbjct 82359 AGGATAGCGCATAAGCATGAAAGTATCAGCTAATCCCTGAACTCCTACACCTATTGGCCT 82418 Query 71556 GTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 71615 |||||||| |||||| |||||| || |||| ||| |||||||| ||||||||| | Sbjct 82419 ATGTCTCTTGTTAGAATATTCAGCCTCAGGAACAGGGTAATAATTCTCGTCTATAATTCT 82478 Query 71616 ATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCC 71675 ||| | ||| | || ||| || | || | ||| |||||| Sbjct 82479 ATTCAAATTGAAAGTAAGTATCTTGCAAGCAGAATGTAATAACTTAAAGTCAAATTCGAG 82538 Query 71676 A--TCTA----TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTC 71729 | | || ||||| || ||| || | || || || ||||| || || || || Sbjct 82539 AGTTTTAGTGTTTACATACTTTGGCAATGCTAGTGAAGCGAGGTTACACACTGCAACTTC 82598 Query 71730 ATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 71789 ||||| | | |||||| | ||| || ||| | || ||| |||| || || |||| Sbjct 82599 ATTAGGAGATGTATATTGCACAATCTCGCAGCATAAGTTGCTAGACTTAATAGTACCTAT 82658 Query 71790 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGT 71849 || | ||||| ||| | ||||| || ||||| || | || | ||||| || || Sbjct 82659 GTTCTTCTGATTTGACTTGTAATTACAAGCGTCCTTGTATAACATGTAAGGAGTTCCTGT 82718 Query 71850 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGT- 71908 |||||| || |||| || || || ||| | | | | || | | | || Sbjct 82719 TTCAATTTGCGATTGTAAGATAGCAAACCAAAGGGTTTGCGCGGGAACTGTTTTGCGACC 82778 Query 71909 -ATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTG 71967 || |||| || | || || |||||| ||| || || ||||||||| | | Sbjct 82779 CATGCCTTTCGACT--CATAACTAGTGTATAATTTTTCAAATTCCTCTCCCCAAACCTGA 82836 Query 71968 TCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGT 72027 |||| ||| ||| |||| || |||||||| | ||| | | ||| | | | || | | Sbjct 82837 TCTAGTCCTCTACACTCATCTGGGCACATCAAAGTCCAGTTTTCATTAGCTTCAACCCTT 82896 Query 72028 TTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTC 72086 ||||| || || || || ||||| | || ||| || | || || | || |||||| Sbjct 82897 TTCATGAAAAGGTCTGGGATCCACAATGC-ATAGAACAAGTCCCTAGCCCTTGACTCCTC 82955 Query 72087 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 72146 || || ||| ||||| ||||| | | |||||||| |||||| || || | Sbjct 82956 TGAACCATGGTTTTTTCGTAGATCTAGGAATTCAAAAATATCAGCATGCCATGGCTCTAG 83015 Query 72147 GTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 72206 ||| ||||| | || | ||| ||||||||||| | || | ||| || | Sbjct 83016 GTAGATGGCAAATGAACCTTTTCTTTTTCCCCCTCCCTGATCAACATAACGAGCAGTATC 83075 Query 72207 ATTATAAACTCTCAACATTGGAATAATACCATTGGA-TGCACCATTGGTCCCGGAGATAT 72265 ||| | | ||| | ||| || ||||| |||||||| ||| ||||| || ||| || | Sbjct 83076 ATTGAATATTCTGAGCATAGGTATAATCCCATTGGAATGC-CCATTTGTGCCGCGAATGT 83134 Query 72266 AGCTTCCACTGG---CACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAG 72322 | | ||||| |||| || ||| |||| || |||||| || ||||| | ||| Sbjct 83135 A---TGAACTGGAGGCACGTATTTTGTGTATTGCTAAACCTATCCCTCCTGCTGTCTTAC 83191 Query 72323 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 72382 || | ||| ||| | | | || ||| | || || ||| ||||||| | || | Sbjct 83192 TAATGAGTGCACATTGGGTAAGGGTGTCAAAAATACCAGAAATAGAATCATCCTTAATAT 83251 Query 72383 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 72442 ||| || || |||||||||||||| || ||||||| | || || | || |||| Sbjct 83252 CAAGAAGGAAGCAGCTAGACATTTGAGGAAATTTAGTTCCAGAGTTGAAGAGTGTGGGAG 83311 Query 72443 AAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATA 72501 ||||| |||| |||| | |||| ||| |||||| ||||| || || || ||| Sbjct 83312 TGGCGTGGATAAATAATTTCTTGGACATGTA-ATTGTAAGTCTCCATGGCACGATCAATA 83370 Query 72502 TCCCATTG--ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGA 72559 | ||||| ||||| || || || | | | | ||||||||| |||||| | | Sbjct 83371 T--CATTGGAGTGTATACCGCAAGCAACTCTGACGAGAAGATGCTGAGGCCTTTCAGCAA 83428 Query 72560 TCTTGTTATTTA 72571 |||| ||||| Sbjct 83429 TCTTCCCATTTA 83440 >seq82 Length=91553 Score = 105 bits (116), Expect = 9e-18 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 |||| ||||| | || ||| ||| |||||||| || || |||| ||||||||||| Sbjct 50092 ACATATAACATCCAAACTCGGCGTGTAGACCCTCGTCCCTGGAGATTAGTTCGTTGGAAA 50033 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCA 42175 | || || |||||||| || || || ||||| ||||||||||| | |||| | | | || Sbjct 50032 AGGTTAGCCCGGGCATGAGCCCGCGTTTTTTCAGCCAAAATAT-GGCGCAGAAGCTACCC 49974 Query 42176 GAAAAGAAGATTCCTTCTACTGCCG 42200 ||||| || |||||||| ||||||| Sbjct 49973 GAAAATAAAATTCCTTCCACTGCCG 49949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138101009560