Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650145.1_202016-05-23] 131 sequences; 6,361,046 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq130 111 2e-19 >seq130 Length=171689 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || ||||| | ||| || ||||| | ||||| |||||||| || ||||| || | Sbjct 28833 CCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGAC 28892 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| ||||| ||||||||| | ||||| ||||| ||||| || || Sbjct 28893 AGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGGA 28952 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || || || ||| || || | | ||| | || || |||| |||||| Sbjct 28953 ATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTACT 29012 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAG 143186 || | || | || || || || | |||||| || ||||||||||||| Sbjct 29013 TCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCATAG 29061 Score = 105 bits (116), Expect = 7e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GT 143030 || ||||| |||| || ||||| ||||||||||| |||| || | ||| ||| || Sbjct 140735 AACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGT 140792 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 | || | |||||| |||||| | || || ||||| |||||||| || || || || |||| Sbjct 140793 CCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGT 140852 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | ||| || |||| | ||| | || || | ||||| || |||| || | | Sbjct 140853 CTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGG 140912 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || || | ||||||||| ||||||||||| Sbjct 140913 TTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 140946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507013569763920