Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650145.1_202016-05-23] 131 sequences; 6,361,046 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq130 89.7 4e-13 >seq130 Length=171689 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || | || |||||||||||| ||||| || |||||||| ||||| ||||| | Sbjct 140720 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTG-A 140778 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || ||| || ||||||||| || || || | |||||| || || ||||| || Sbjct 140779 AAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGG 140838 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||| ||| || ||| | | | || ||||| ||| ||| Sbjct 140839 AATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCAC 140898 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | |||||||||||||| || || ||||| ||||| || ||||| Sbjct 140899 CTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 140946 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||| || || ||||| ||||| | || ||| |||||||| ||||| || | | Sbjct 28833 CCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGAC 28892 Query 48560 A-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | | || || |||| || || |||||||| | |||| | || || ||||| || Sbjct 28893 AGAGTGCGGC-CGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGG 28951 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||| ||| ||| || ||| | | | || ||||| | | ||| Sbjct 28952 AATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTAC 29011 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || | ||| ||||||||||| ||||| ||||||||||| || ||||| ||| Sbjct 29012 TTCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCATAGTG 29063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421250527446131