Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650145.1_202016-05-23] 131 sequences; 6,361,046 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq130 125 8e-24 >seq130 Length=171689 Score = 125 bits (138), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || | ||| | ||||||||||||||| || ||| |||||||||||||| || | | Sbjct 28833 CCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGAC 28892 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || |||| ||||| ||||||||||| || || ||||| || || || | ||| Sbjct 28893 AGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGGA 28952 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||| ||| ||| | || | || | | | | || || || | || || Sbjct 28953 ATTCCCTCCTTATCC-TGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTAC 29011 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||| ||||| || || || ||||| |||||||| Sbjct 29012 TTCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCAT 29059 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || || ||||| | || || || |||| || | || || ||||| || Sbjct 140756 TCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAA 140815 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 42136 || ||||| || || |||| || | | ||||||||| ||| | || | || | | Sbjct 140816 ATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCT-TGAATCTTAGCCTTTACATT 140874 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | || || || | |||||| || | || |||||||| ||||| || || ||||| Sbjct 140875 TTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTAC 140934 Query 42197 AAAGATTTGCATTTTCAC 42214 ||| ||||||||||| || Sbjct 140935 AAATATTTGCATTTTTAC 140952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543211910489040