Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650145.1_202016-05-23] 131 sequences; 6,361,046 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq130 158 9e-34 >seq130 Length=171689 Score = 158 bits (174), Expect = 9e-34 Identities = 176/233 (76%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || ||||| ||||| ||||| || || || ||||||||||| |||| ||| Sbjct 140720 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT--CTG 140777 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | | | || |||| || |||||||| ||||| | || | || ||||| ||| | Sbjct 140778 AAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGG 140837 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||||||| |||||||| ||| || |||||| |||| |||||||| ||| ||| | Sbjct 140838 GAATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCA 140897 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 | || | ||| ||||||||||| || || ||||||||||| |||||||| ||| Sbjct 140898 CCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATTTTT 140950 Score = 138 bits (152), Expect = 8e-28 Identities = 171/233 (73%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 14945 GTCTGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAAT 15004 |||| ||||| || ||||| || || ||||| | ||||| |||||||| || ||||| | Sbjct 28829 GTCT-CCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGT 28887 Query 15005 CGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGT 15064 | ||| | | ||||||||| ||| || ||||| | |||| || ||||| || Sbjct 28888 CTGACAGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAG 28947 Query 15065 TTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTT 15124 ||||||||| ||||| || ||| || || ||| |||| |||||||| || | Sbjct 28948 GTGGAATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCT 29007 Query 15125 CTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| || || || ||||||||||| || || ||||| ||||| ||||||||| Sbjct 29008 CTACTTCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCATA 29060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391429401335