Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650145.1_202016-05-23] 131 sequences; 6,361,046 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq84 313 3e-80 seq58 147 3e-30 >seq84 Length=66450 Score = 313 bits (346), Expect = 3e-80 Identities = 1074/1661 (65%), Gaps = 40/1661 (2%) Strand=Plus/Plus Query 6508 TTTCATTTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGAC---CTTTTTCGCGTA 6564 ||||||| |||||| ||||| || || ||||||| | || || | | ||| | Sbjct 57263 TTTCATTGAATAACAATAGTTCTCAAGTTCATTCTTGGATTCAACACACCTCTTC---TT 57319 Query 6565 CTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTT 6624 ||||||||| || || || |||| || || || |||||| | |||||||||| | Sbjct 57320 CTTTTCATCATCTTCCCTAAACTTCTCTGCTTCAGCAACCATCCTATCAATGTCTTGCTG 57379 Query 6625 CGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATC 6684 || | ||| ||||| ||||| || || || | | ||| | || || | | ||| || Sbjct 57380 TGAAAGTCTTCCCTTGTCATTTGTTATAGTTACATGTTCAGTCTTTCCTGTCGACTTGTC 57439 Query 6685 TTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGG 6744 ||||| || |||| |||||||| ||||| | || || | || ||||| || || Sbjct 57440 GGCAGCAGACACTGTCAATATACCATTGGCATCGATGTCAAAGGTGACTTTAATCTGGGG 57499 Query 6745 TGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATC 6804 || || || || | || || || || |||| ||| | || |||||| |||| || Sbjct 57500 AACTCCTCTTGGAGCAGGAGGTATGCCAGTCAAATGGAATTTGCCTAGTAAATTGTTGTC 57559 Query 6805 CGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTG 6864 | | | |||||| ||||| |||| | || | ||| | | ||| |||| || Sbjct 57560 ACATGTCATAGAACGTTCTCCTTCGAAGACCTGGATCATAACCCCCGTTTGGTTATTTTC 57619 Query 6865 TGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGG 6924 |||| || |||||| ||||| | || || || |||||||| || || | | Sbjct 57620 ATTGGTTGTAAATTCTTGTTCCTTCTTGGCGGGGATAGTAGTATTTCTGGGTATCAGCAC 57679 Query 6925 GGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAA 6984 |||||||| ||| || || || ||||| || ||||| || || || || | |||| Sbjct 57680 GGTCATAACACCGCCGGCGGTCTCAAGTCCTAGTGACAGTGGAGTGACATCTA---GTAA 57736 Query 6985 CAGG---TCTTGAAC------AGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGAC 7035 ||| ||||| || ||||| ||| || ||||| || || || || || Sbjct 57737 CAGTAAATCTTGGACCTTGCTAGATTG------TTCGCCAGTTAAAATTGCAGCCTGAAC 57790 Query 7036 CGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTT 7095 | ||| || || || || || || || |||||||| | ||| ||||||| || || Sbjct 57791 AGCCGCGCCATAGGCTACTGCTTCGTCTGGGTTAATTGATTTGCAGGGTTCTTTGCCATT 57850 Query 7096 AAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAAC 7155 ||| | ||| | || ||| || || || ||||| || ||||| || || || | || Sbjct 57851 GAAAAAGTCCTTAATCAATTGCTGTATCTTAGGGATACGGGTCGAACCTCCTACAAGTAC 57910 Query 7156 GATTTCATTCACTTTCGATTTATCGATCTTTGAGTCT-CGAAGTGTTTTTTCGACAGGTT 7214 | ||||| | | | ||||| || | || || | ||| | ||||||||| || Sbjct 57911 CACTTCATGGATCTGCTTCTTATCCATATCTGCATCAGCTAAG-GCTTTTTCGACTGGGA 57969 Query 7215 CCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATG 7274 | | || ||||| || ||| || ||||| || | || | || ||| Sbjct 57970 TTAAAGTGTTTTTGAACATTTCGGCACAGAGCTCCTCGAATCTGGCCCTAGTGATGTTGC 58029 Query 7275 TATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAG 7334 | | | || | ||| || ||| | || | |||| || | |||| | | Sbjct 58030 AACTGTAGTCGATGCCATCAAATATAGCTTCTACAACAATCGTGGCCTGTGTTGAGTGGG 58089 Query 7335 ATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTAC 7394 |||| || || || || || ||||| |||| | | ||| | ||||| || Sbjct 58090 ATAAGGTGCGTTTAGCACGTTCACATTGTGTTCTAAGTCTACGTAATGCACGTCTATTGG 58149 Query 7395 CGGAAATATCTTTCTT---ATGTTTACGTTTAAACTCTTCAGAG-AAGTGTCGAAGGAGT 7450 ||||||| ||| || || || ||||| || || | || || || | | Sbjct 58150 TTGAAATATTCTTCCCGCCATTCTTTCGCTTAAAGTCATCTACGCAAAAGTTGACCAA-T 58208 Query 7451 CTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAG 7510 || || || || ||||| |||||||| ||||| || || || || || ||||| Sbjct 58209 CTGTTGTCAAAGTCCTCACCGCCCAAGTGGGTATCACCTTGTGTGGCCTTTACCTCAAAA 58268 Query 7511 ATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATG 7570 || || |||| || |||| | || ||||| || || ||||| |||| || ||||| Sbjct 58269 ATGCCATCTTCGATAGTTAAAATTGATACATCGAAAGTGCCACCGCCCAAATCGAAAATC 58328 Query 7571 AGTACGTTCGTATC-GTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGT 7629 | || || | || | || | ||||| || | ||| || || || || || || || Sbjct 58329 AACACATTTTTTTCAGAAGTACCT-TTCTTGTCCATACCATAGGCAATTGCGGCAGCAGT 58387 Query 7630 TGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGC 7689 ||||||||| |||||||| | | || | |||||||| || | || || || || || Sbjct 58388 TGGTTCATTGATAATACGCATAACATTTAACCCAGCAATGGTACCAGCGTCCTTAGTGGC 58447 Query 7690 TTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTT 7749 |||||||| ||||||||||| || || || || || | || || | | || | |||| Sbjct 58448 CTGTCGTTGAGAATCGTTAAAATAAGCGGGTACAGTGATAACAGCATTAGAGATTGTCTT 58507 Query 7750 ACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || | ||| ||||| || || || ||||| ||||| || ||||| || || || || || Sbjct 58508 TCCCAAATAAGATTCTGCAATTTCCTTCATCTTGGTGAGGACCATAGAAGATATTTCCTC 58567 Query 7810 AGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGC 7869 | || ||| |||||||| | ||| | || | |||| || ||||| | Sbjct 58568 TGGGTGGAAGGATTTAGTTTCACCCTGAAATTGTACCTTGATCACAGGCTTATCATTTGG 58627 Query 7870 ACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGG--TCCGAA 7927 || | ||| || | | ||| | ||| ||||| ||||| || || || Sbjct 58628 TCCAGCCGCAACAGTAAATGGCCAGTGTTTTATATCACTTTGGA--TGCAGGGATCATTG 58685 Query 7928 AACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT 7987 | |||||| || || | | |||||||||||||||||||||| || || | || Sbjct 58686 ATCTTTCTCCCTATCAATCTTTTTGCATCAAAAACTGTGTTTTCAGGATTTCTAGCATCC 58745 Query 7988 TGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGAT 8047 || || || || ||||| || | | || || | || || || || || || || Sbjct 58746 TGATTTTTGGCGGCGTCGCCAACCAATCGCTCCACA---TCAGTGAAGGCAACATAAGAC 58802 Query 8048 GGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 || || || || || ||||| || || || ||||||||||| || |||| ||| ||| Sbjct 58803 GGAGTTGTACGGTTGCCTTGATCATTGGCTATAATTTCTACAGTTTCATTTTTCCAAACG 58862 Query 8108 CCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || || || || || || ||||| |||||||| || || || Sbjct 58863 CCAACACATGAGTAAGTGGTTCCCAAATCAATCCCAATAGC 58903 >seq58 Length=16237 Score = 147 bits (162), Expect = 3e-30 Identities = 239/339 (71%), Gaps = 9/339 (3%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| ||||||||||| || | ||| ||||| || | |||||| |||||||||| | ||| Sbjct 5153 ATCAAAATCTTCACCGCCGAGGTGAGTATCTCCTGATGTCGCTATGACTTCAAATACACC 5212 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 ||||| | | | ||||||||||| ||||||||||| || ||| | | | | Sbjct 5213 GTTGTCAATTGTAAGTAGGGAAACATCAAAAGTACCACCACCGAGATCATAGACCAAAAT 5272 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || | || || || || || || ||||| || || ||||| || || || ||||| Sbjct 5273 ATTTTTTTCTTCATC---CTTATTGTCAAGACCATAAGCAATAGCAGCGGCTGTGGGTTC 5329 Query 7636 ATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTTG 7692 ||| | ||||| || ||| |||| |||||||| ||| | |||||||| || ||||| Sbjct 5330 ATTGAGTATACGTAATACA-TTCAAACCAGCAAT--TTGACCTGCATCTTTGGTAGCTTG 5386 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || || | ||| ||||| || || || || || || || || | | ||| ||| ||| Sbjct 5387 GCGCTGGGCATCATTAAAATATGCAGGAACTGTCACAACGGCATTTTTAACTGTCTGACC 5446 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791 |||| | ||| || || |||||||||| ||| || Sbjct 5447 GAGAAAGTTTTCGGCCATGCTCTTCATTTTGGAAAGCAC 5485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131759970040