Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650145.1_202016-05-23] 131 sequences; 6,361,046 total letters Query= NC_019915.1 Length=40917 Score E Sequences producing significant alignments: (Bits) Value seq23 747 0.0 seq11 273 6e-69 seq34 147 6e-31 >seq23 Length=1076 Score = 747 bits (828), Expect = 0.0 Identities = 814/1077 (76%), Gaps = 4/1077 (0%) Strand=Plus/Plus Query 21071 CCTGCATCGTCAATGAAACTTATACAAACACTTAGAAGCAATCTAGTTAAGTGGCGAAAA 21130 || ||||| || ||| || |||||||| | ||||| || || ||| ||||| | Sbjct 3 CCAGCATCATCTATGGCTCTAATACAAACGTTAAGAAGTGATTTAACTAAATGGCGTTCA 62 Query 21131 GATAACATCGAGGTGATAGCCGATGAATCTTAATGAGCTTGATTATAGAATTGTTTTTTA 21190 |||||| | |||||||||| ||||||||||||| | | |||| ||| || ||||| Sbjct 63 GATAACTTAGAGGTGATAGATGATGAATCTTAATCAATTAGATTTCAGAGTTTCGTTTTA 122 Query 21191 TTCAGTTTCAAATAACGGACCCGAAGCAGGAACGGGTAACTGGGAAGAAGTTTTTAGTTG 21250 | | | | | || || ||||| |||| | | | | |||||||| ||| || Sbjct 123 TGAAATCATGAGCGATGGTCCAGAAGCTGGAATGAATGAGCCAGTAGAAGTTTATAGCTG 182 Query 21251 CTTCGCTGGTCTATACGAACCTACGCAAAAAGATGTACAATTAGGAAATTTAGAAACGAG 21310 |||| ||| |||| |||||||| ||||||||||| |||||||| || ||||| || Sbjct 183 TTTCGGTGGCTTATATGAACCTACACAAAAAGATGTTCAATTAGGGAACTTAGAGCTTAG 242 Query 21311 TAAACGTTCTGTAACTATTAATATTAGAAATGCACAGCCTGACTTTCTACCTACAGTCAA 21370 |||| | || || || | ||||||||||| |||| || | ||| |||||| || || Sbjct 243 TAAAAGGTCAGTCACATTAAATATTAGAAACCCACAACCCCAATTTATACCTAATGTTAA 302 Query 21371 TCACGTATTTGAGATTAAAAATGGAATGTATGCTGGGTTAACTTTTGACATTAAGAACGT 21430 ||| |||||| |||||||| || || ||| ||||| |||| | || || || || Sbjct 303 TCAAACATTTGAAATTAAAAACGGTATTTATAAAGGGTTGTTTTTTAATATAAAAAATGT 362 Query 21431 TGCTCCTGCTAAAACTCCTAATTACATCAAAGTGGTAGGTGAAGAATCATAGGGGTATCA 21490 |||| |||||| ||||||||||||||||| ||||| ||||||||| || |||| Sbjct 363 GGCTCTTGCTAAGACTCCTAATTACATCAAGGTGGTTGGTGAAGAAGAATGACAATATCT 422 Query 21491 ATCAAAGGTGATAAAGAACTTATAGCATATTTAGAAAAGCATTATGGAACATCAGCAACA 21550 | ||||| ||||| ||| |||| || |||||||||||| | | ||| | ||| ||||| Sbjct 423 GTTAAAGGCGATAAGGAAATTATCGCTTATTTAGAAAAGAAGTTTGGGAAATCTGCAACT 482 Query 21551 AAGCGTATCACTGATTATGCATTAACTAAAGGTGGAAACAAGGTTGTAAGTGTTATCAAA 21610 || ||||| ||||||| ||| ||||||||||| || | || |||||| |||| ||| Sbjct 483 AAACGTATAACTGATTTTGCTTTAACTAAAGGCGGTCAAAAAGTTGTACAGATTATAAAA 542 Query 21611 AGTAATATGAAAACTTTTAAAGACACTGGAGAATCGGTAGAAGAAACTACACTTTCAAAA 21670 || ||||| | |||||||| ||||| ||||| || |||||| | | || ||| Sbjct 543 AGAGATATGGGTTCATTTAAAGATACTGGTGAATCTGTGTCTGAAACTTCTTTATCTAAA 602 Query 21671 CCTATGACGATAAGCGGTGTAAGAACCGTTAAAATTCATTGGCGTGGTCCTAAACAACGT 21730 || ||||| || | ||||| | || |||||| ||||||||||||||||||| |||||| Sbjct 603 CCAATGACTATTGGTGGTGTGCGTACAGTTAAAGTTCATTGGCGTGGTCCTAAGCAACGT 662 Query 21731 TATCGTATTATCCATCTAAATGAATACGGTCACTTTGATCGTTCAGGTAAATGGGTTAAT 21790 || | || || ||||| ||||||| ||||| | || ||||||||||| ||||||||| Sbjct 663 TACAGAATAATACATCTTAATGAATTTGGTCATTACGACCGTTCAGGTAAGTGGGTTAAT 722 Query 21791 ACAGCAGGTAAAGGTGTTATTGAAAACGCTATGCGTGAAGGCAGAGAAACGTATTTCAGA 21850 || || ||||||||||| |||||| |||||||||||||| |||||||| ||||| ||| Sbjct 723 ACCGCTGGTAAAGGTGTAATTGAACGAGCTATGCGTGAAGGTAGAGAAACTTATTTTAGA 782 Query 21851 ACAGTAAAAGAAGAAATGAGAAAGAGGGTGTAATTTATTGGATGACATCACAATGAAAAT 21910 ||||| ||||||||||| |||| |||||||||| | |||| ||||||| ||||| || Sbjct 783 ACAGTGAAAGAAGAAATCAGAAGGAGGGTGTAA--GAGTGGAAGACATCATGATGAAGAT 840 Query 21911 ATACGAAGCGATTATAGATAACAAAGAAATTATGAATCATGTTCAAAAGAACAATATTAA 21970 |||| ||||||||| |||||| ||||||| ||||| | ||| | || ||| ||||||| Sbjct 841 ATACAAAGCGATTACAGATAATCAAGAAATCATGAACAACGTTAATAAAAACGATATTAA 900 Query 21971 ATTCTTTGATTATCCAAACGCACAAGAAATTAGAGATGTAGTG-ATTGTCATAGATCCAT 22029 ||| | ||||||||||||||||||||||| | ||| | || ||||||||||| ||| Sbjct 901 ATTTTACGATTATCCAAACGCACAAGAAATCA-AGACGACATGTATTGTCATAGACCCAA 959 Query 22030 TAGATACACCTACACCTACTGATTTTGGTGATAATGATAATCTCACTTACGAATATTTTT 22089 |||| ||||||| || ||||||||| ||| | || ||| | || |||||||| | | Sbjct 960 TAGACACACCTAAGCCCTCTGATTTTGCAGATGACGACAATATGACATACGAATACCTAT 1019 Query 22090 ATCAAATAGATGTATTTGTAAAACAAAAACAAGGAGTAAACGGACGAGTCTTATCAG 22146 ||||||||| | || ||||||||||| ||| | || ||||||||| |||||| Sbjct 1020 TCCAAATAGATATCTTCGTAAAACAAAATACAGGCATTAATGGACGAGTCCTATCAG 1076 >seq11 Length=2611 Score = 273 bits (302), Expect = 6e-69 Identities = 671/992 (68%), Gaps = 49/992 (5%) Strand=Plus/Minus Query 28281 GGTTATGCCACTGGCGGTCTTATTAACACTGCTGGATTATATAATTTGGCAGAAGATGGG 28340 |||||||||||||| || | ||||| | |||| ||||| ||||| |||||||| || Sbjct 980 GGTTATGCCACTGGTGGATTGATTAATTCGTCTGGTTTATACAATTTAGCAGAAGAAGGA 921 Query 28341 TACCCTGAGATAGTGATACCTACAGATCCAAGCAGACAATCAGATGCGATGAAATTGTTA 28400 | || || | || ||||||||||| |||||||||||||| || || ||||| |||| Sbjct 920 CATCCAGAATTTGTAATACCTACAGACCCAAGCAGACAATCTGACGCAATGAA---GTTA 864 Query 28401 CATCTTGCT---GCAAG--TAAAATTAG-TGGAAATAACAGAAATAAACGACCTAACCAA 28454 |||||| || || || | ||| || ||||| | ||| ||||||||||| ||| Sbjct 863 ---CTTGCTATAGCTAGACAAAGAATAGAAGGTAATAAGAAAAACAAACGACCTAATCAA 807 Query 28455 TTACGTACAC---CTAATGTTACTAGTAATACAGT--TGATAATGCAGAATTACTACTAC 28509 | ||||||| ||| || | |||| ||||| |||||| ||||| || | || | Sbjct 806 ATGCGTACACCATCTACTGGTGAAAGTA--ACAGTAATGATAACACAGAACTATTGCTTC 749 Query 28510 AAATGATAGAAAATCAACAGAAACAAATAAACGTGTTAATGGAAATAGCACGAAGTAATA 28569 ||||||| | || |||||||||||| || | | | ||| |||| ||| ||||||||| Sbjct 748 AAATGATTGCTAACCAACAGAAACAACTAGATGCTCTTATGCAAATTGCAAGAAGTAATA 689 Query 28570 AAACTATTGAAAAACAACCGAAAGGTTTTTCAGAACACGATGTAAGTCAGGCACAAGGTT 28629 | | || ||| || |||| | ||| || ||| | ||| | ||| || |||||| Sbjct 688 AGAACATCGAACAAAAACCAACTGGTGTTAGTGAAAATGATATGAGTAGAGCGCAAGGTA 629 Query 28630 CAAGGTTAAGACTCGCTGCTTATAGCCAGGGAGGT--TTATAAATTGGaaaataaaaaag 28687 | | | | | || |||| ||||||| || |||| |||| || ||| Sbjct 628 AACGAGCACAAATGATGGCATATAATATGGGAGGTGCTTTCTAATTTGAAA--AAGGAAG 571 Query 28688 taaaaaTATTTAACGATCATTTCGAAGAAACACTAACGGATATTCCTCATCTTAAGTTTC 28747 |||| ||||||| ||| || | | || |||||| || || ||| | | ||||||| Sbjct 570 TAAAGTTATTTAATGATGATATAAACATAAAACTAACCGACATACCTAACTTGAAGTTTC 511 Query 28748 TAGAATTTGAAGAAGAGGATTTAGA--TAGAAAGTCTAATCAGATTGAAGTTAATGGTAG 28805 | || || || || | | | || || |||| | | | | ||||| | ||||| | Sbjct 510 TTGATTTCATTGAGGAAGGTGTCGAAGTA-AAAGCCAACACTG-TTGAAATGAATGGAAC 453 Query 28806 TGATGGCGTTTTACAAGGACCGATGAATTTCGGTCCTTTTAATTTGATACTGAGATTTGC 28865 ||||| || ||| || || | || |||||||||||||||||| | | ||| | Sbjct 452 AGATGGAGTATTAGTGGGGCCAAATTCGTTTGGTCCTTTTAATTTGATATTAAACTTTTC 393 Query 28866 ATATAAAGG-CATGGATTATAAAGAATATAGATTAGCAAAAGAAAAGTT---ACGTCAAT 28921 || ||||| ||| ||| | ||| | ||||| ||| ||||||| | || || Sbjct 392 ATTCAAAGGTCAT-GATACAACAGATTTAAGATTGATTAAACAAAAGTTAAGAGGTTTAT 334 Query 28922 TGATAAATAGGAGAGATCCTTATTTCGTATGGCATTCAGATATGCCAGGTAAAAAGTATG 28981 || | || | || ||||||| ||| ||||| || ||| |||| ||||| || |||| Sbjct 333 TGTT---CAGACGTGAACCTTATTACGTTTGGCACTCTGATTTGCCTGGTAAGAAATATG 277 Query 28982 CAG-TTAT--ACCAGAGGGTGTCAGTAATGAAAACTTAAC-AAGTCAATTCGGACTTATT 29037 ||| |||| |||| | || |||| |||| ||||| || ||| || |||| || Sbjct 276 CAGTTTATTGTACAGAAGATG---GTAACGAAAGTTTAACGAATTCATTTGCTACTT-TT 221 Query 29038 GAGGTGACTTATTCTGTCTACAAAGGATATGCAGAATCATTAAAAGATACTTCTGAATTT 29097 | || |||| | || | ||||| ||| |||||||||| ||||| ||| | | ||| Sbjct 220 GCAGTAACTTTTGTAGTATTTAAAGGTTATTCAGAATCATTTAAAGAAACTGATCAGTTT 161 Query 29098 AGTTGGACTGATGAAAGTTGGCAATTTGAACAAGGTGTTATAGGAAGTGATGAAGTTAAA 29157 |||| || || | |||||| |||||| ||||| ||| ||| || |||| Sbjct 160 AGTTTATCTAGTGGAGATTGGCAGTTTGAAGGCGGTGTGTTAGCTTATGAAGATATTAAG 101 Query 29158 TATAAACACAATATTCGTTACTTTAAAATATTT--AACGGTTCTAAAGATACTATTAACC 29215 || || || ||| || | || ||||||| || ||||| || || |||| Sbjct 100 TACAAGCATGATA--CGACAAGTTTCAATATTTACAATGGTTCCTCTGACGTAATCAACC 43 Query 29216 CTTTATTAAGACACAAATT--AAATATTAATT 29245 | || ||||||| || || || |||||||| Sbjct 42 CATTGCTAAGACATAAGTTCAAATTATTAATT 11 >seq34 Length=2636 Score = 147 bits (162), Expect = 6e-31 Identities = 330/483 (68%), Gaps = 26/483 (5%) Strand=Plus/Minus Query 30313 TTTGATTGTAAGTGGGGGAATGAAACCTTAACTTGGAATCTaaaaaaaGGACCTAAAGGT 30372 ||||| ||||| ||||| || ||||| ||| |||| | |||| ||| |||||||| Sbjct 2587 TTTGAATGTAAATGGGGAAACGAAACGTTAGAATGGACTTTAAAGAAAATGTCTAAAGGT 2528 Query 30373 GGAATAATCGAAGTATTTATTGATGATAAGTCGAAAGGGACTTTTGATTGTTACAGCACT 30432 || |||| || |||| | || |||| | || || | | ||| ||||| || | Sbjct 2527 GGTTTAATTGATGTATACCTAGACAATAAATTGATTGGTTCATATGAGTGTTATAGTAAA 2468 Query 30433 CATGCTTCGAC---GCAAAAAGTGATTTTAGCTAAAGGA--TTATCAAAAGGTAAACATT 30487 ||| ||| | ||| ||| ||| |||| ||| ||||| |||||||||||| Sbjct 2467 ACAGCTACGAGTGAGAAAATAGTAATT---GCTA--GGAATTTATCGAAAGGTAAACATG 2413 Query 30488 CTTTTAGAGGAGTTTTTAAATCGAAAAAACCTGGTATTGATTATAAGAAGTCTAATCCAA 30547 ||| | || ||| |||| | || |||||| | |||||||| | || | || Sbjct 2412 TTTTCAAAGCAGTATTTAGAGGTGCTAAGCCTGGTGTGGATTATAAAGAATCGA----AA 2357 Query 30548 TCATGTATGTTGGTACGA---GTAAAA-GTAGTGTTTTAAATCTAACTGCAGTTCTTAAA 30603 ||||||||| ||| || | |||| | ||| |||||| |||| ||||| | ||| Sbjct 2356 GCATGTATGTACGTAGGAACTGAAAAATCAACTGTATTAAATTTAACGGCAGTATTAAAA 2297 Query 30604 GGTAAAGATATTTATCATGTATATGCTGAATATAAGTCGCCATATTATAAGCAATAT-GG 30662 || | ||||||||| |||| |||||| ||||| || |||||| ||||| | || | | || Sbjct 2296 GGAACAGATATTTACCATGCATATGCAGAATACAAATCGCCAAATTATGA-CATTTTCGG 2238 Query 30663 TAAATCAGAAGCCCCAACAATATATGATGATAAT--ATTACAAGTCAATCAGAGTTAAAG 30720 | || || || ||||| ||| |||||||||| || | | | ||| || ||| Sbjct 2237 ACACTCTGAGGCACCAACGGTATTTGATGATAATGCCTTGGATAGCGA--AGAATTGAAG 2180 Query 30721 AAGAAATTAAAAGAAACACTTG-ATGATATTCCAACAATCGAAGTAGCAACGAATTATTT 30779 || || | | || |||| ||| | ||| |||||| | ||||| | || || ||||| Sbjct 2179 AAAAATATTATAG-AACAGTTGAACGATCAACCAACAGTTGAAGTTTCCACAAACTATTT 2121 Query 30780 AGG 30782 ||| Sbjct 2120 AGG 2118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130812596504338