Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650145.1_202016-05-23] 131 sequences; 6,361,046 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq130 141 8e-29 >seq130 Length=171689 Score = 141 bits (156), Expect = 8e-29 Identities = 162/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || || |||||||| || || || || || ||| | | Sbjct 140946 ATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAGT 140887 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| ||||| ||||| |||||||| || ||||| || ||||||||| Sbjct 140886 GATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCAA 140827 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACATGTCAGATTATA 24881 ||||| | || ||||| || ||||| ||||||| ||| | || | |||||||||| Sbjct 140826 CAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCG-TACAC-TTTCAGATTATA 140769 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTT 24915 |||| |||||||||||||| || ||||| ||||| Sbjct 140768 ACATACAAAAGGAATCGACGCTTCACTTAGTGTT 140735 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| || ||| | ||||| || || |||||||| || || | |||||||| || Sbjct 29062 ACTATGCAAATATTTGTGAAAACACTCACGGGTAAAACCATCACATTGGAAGTAGAGCCC 29003 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || | |||| || || ||||| || || || || ||||| || || ||| Sbjct 29002 AGTGATACTATCGAAAATGTTAAGGCTAAGATTCAGGATAAGGAGGGAATTCCACCTGAT 28943 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 |||||||| |||| ||||| || || || || || || | | ||||||| || Sbjct 28942 CAACAACGACTGATTTTTGCTGGTAAGCAACTAGAAGACGGCCGCACTCTGTCAGACTAC 28883 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| || || || | || ||||||||| |||| ||||| || Sbjct 28882 AATATTCAAAAAGAGTCTACTTTGCATTTGGTGTTGAGATTACGCGGTGG 28833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896863292680