Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650145.1_202016-05-23] 131 sequences; 6,361,046 total letters Query= NC_022914.1 Length=43394 Score E Sequences producing significant alignments: (Bits) Value seq16 352 8e-93 seq17 286 1e-72 seq11 167 6e-37 >seq16 Length=1008 Score = 352 bits (390), Expect = 8e-93 Identities = 219/235 (93%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 38062 GTGGCTAGATAGATGAAGATTAGAGATTTAGACTTAGATCAATACGTAATCGTGTATGAC 38121 |||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 338 GTGGTTAAGTAGATGAAGATTAGAGATTTAGACTTAGATCAATACGTAATTGTGTATGAC 279 Query 38122 ATTGGCAAGAGTGAACACAGTGAAGGTATGACGGTTGTAGGACGTGTGGAAGAAATTGTG 38181 || || |||||||| ||| | | || || || ||||||||||||||||||||||| ||| Sbjct 278 ATGGGTAAGAGTGAGAACAATAACGGCATAACTGTTGTAGGACGTGTGGAAGAAATAGTG 219 Query 38182 TTCAATGATGATAACGACAATGTAGCTACTATCAATTCATTAGGTAACTTATACGATATC 38241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 218 TTCAATGATGATAACGACAATGTAGCTACTATCAATTCATTAGGTAACTTATACGATATC 159 Query 38242 ACAGACGATAACGATTTTGAGTTATGGAGTAAGAGTATCGAAGGTAAGACAGAGA 38296 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 158 ACAGACGATAACGATTTTGAGTTATGGAGTAAGAGTATCGAAGTTAAGACAGAGA 104 Score = 192 bits (212), Expect = 2e-44 Identities = 172/213 (81%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 37473 AACAATAACACTACAAATCAAAGTGGAAGTTGAACAGGAAGTAACAGTACCTGTGGCAGA 37532 |||||| ||| || |||||||||| ||||| ||||| || ||||| || |||||| || Sbjct 916 AACAATTACATTAAAAATCAAAGTAGAAGTGGAACAAGAGGTAACTGTGCCTGTGAAAGC 857 Query 37533 CAATTACGACTTAGAA-GAAATAAGTAACAGTGAAGCAGATAAGGTAGCTGAGAAATATA 37591 || || || |||||| | | |||| ||| ||||||||||||| | | ||| || ||| Sbjct 856 TAACTATGATTTAGAAAGTATTAAGGAAC-GTGAAGCAGATAAAGCATATGACAAGTATG 798 Query 37592 AAAACAACCCAGAGTTACTAGGGTTTGAAGATATTAAATTCAGAAAAGTATCAGACGTAC 37651 ||| |||||||| |||||||||||||||||||||||||| | ||||||||||||| Sbjct 797 TAAATAACCCAGAAAGACTAGGGTTTGAAGATATTAAATTCAAGGACGTATCAGACGTAC 738 Query 37652 AAGTTAAGGATTATTAGGAGGACGAGAAAGATG 37684 ||||||| ||||||||||||||||| || ||| Sbjct 737 AAGTTAAAGATTATTAGGAGGACGAACAATATG 705 >seq17 Length=1121 Score = 286 bits (316), Expect = 1e-72 Identities = 167/173 (97%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 26946 GCTTTTTCGAAAGCGTCATTCATTGCTATAGTTGCGTCTATTTTCTTCGTAAAGCCCGAT 27005 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1121 GCTTTTTCGAAAGCGTCATTCATTGCTATAGTTGCATCTATTTTCTTCGTAAAGCCCGAT 1062 Query 27006 TTTCTATAACGTTTACCGTTTAAAACGAAATCGTAGCGCCATTTATTTCCTTGCTTCTTG 27065 || |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1061 TTCCTATAACGTTTACCGTTTAACACGAAATCGTAGCGCCATTTATTTCCTTGTTTCTTG 1002 Query 27066 ACTGTCATTGTCATTCCTCCTAAAAAAGATAAAAATATATAGGGCATTGTGAA 27118 ||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1001 ACTGTCATTGTCATTCCTCCTAAAAAAGATAAAAATATATAGGGCATAGTTAA 949 Score = 84.2 bits (92), Expect = 6e-12 Identities = 80/101 (79%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 27785 CGACTTTCTT-CTTCTTTCCCGCATGCCACTAATACTAAAAAACTGGATAATAACAAAAA 27843 |||||| ||| |||||| || ||||| |||| ||||||||||| | || ||| ||||| Sbjct 519 CGACTTACTTTCTTCTTGTCCACATGCTGCTAAAACTAAAAAACTAGCTAGTAATAAAAA 460 Query 27844 TAATACCTTTTTCATTTCACATTCTCCTTAATAATAAATTT 27884 | | |||||||| |||||||||| |||||||||||| Sbjct 459 AGAAAACTTTTTCACCATACATTCTCCTCAATAATAAATTT 419 >seq11 Length=2611 Score = 167 bits (184), Expect = 6e-37 Identities = 243/341 (71%), Gaps = 3/341 (1%) Strand=Plus/Minus Query 13223 AAATGGAAATCTAAAGTTAAACAAGCTGCCAAAGCCACAGGTGTTAAATTATCCGGTTCA 13282 ||||||||| | |||||| ||||||||||| || || |||||| || ||| Sbjct 1331 AAATGGAAAGGCGATATTAAACGTGCTGCCAAAGCAACGGGAACTAAATTGTCAGGTAGT 1272 Query 13283 AAACTGAACGATATTCTTAAACTTATTCAAACTGAATCTGGTGGACGCGCAGGTGTTACT 13342 ||| | |||||||| ||||||||||||| ||||||||| |||| | | |||||| Sbjct 1271 AAATTAAACGATATCGTTAAACTTATTCAGACTGAATCTAATGGAGACCCTAAAGTTACT 1212 Query 13343 CAACA--GATTCA-AGACGAAAACTCTGGAGGTAATGAAGCACAAGGATTATTACAATAT 13399 ||||| | | || ||| | ||| ||| |||||||| |||| || ||| | ||||| Sbjct 1211 CAACATGGTTACACAGATGTTAACAGTGGCGGTAATGAGGCACGTGGTTTACTTCAATAC 1152 Query 13400 ACACCGACAACATTTAGAGGTTACTCTGCTAAAGGTAAAAAGAATATCAAAAATGGTTAC 13459 || || ||||||| ||| ||| |||||||| | ||||| ||| || | | Sbjct 1151 ACTCCTGGAACATTTGCAGGGTACAAAACTAAAGGTGGAGGAAATATTCTAAACGGCTTC 1092 Query 13460 CATCAATTAATGGCATTCTTCAATAACTCGAATTGGTCAAGTGACTTAGCAGCATGGAAA 13519 || ||| | | || || ||||||||| |||||| ||||| | ||| |||||||| Sbjct 1091 CACCAACTTAAAGCCTTTTTCAATAACAGTAATTGGAGCGGTGACCTTGCATCATGGAAA 1032 Query 13520 CGCAGAATGGCTAGAGGTTCGACAGGTTGGGGGCCAACTGG 13560 |||||||| ||||||| || |||||||| || ||||| Sbjct 1031 TCAAGAATGGCAAGAGGTTTAACTGGTTGGGGCCCTACTGG 991 Score = 82.4 bits (90), Expect = 2e-11 Identities = 145/206 (70%), Gaps = 8/206 (4%) Strand=Plus/Minus Query 12620 GGCGATGTTATGGACTGGATAGAAAAACCAGGTAAATTACTTGATAAAGTCTTAGAAGGA 12679 || ||||| ||||||||||| |||| ||||||||||||||| ||||| | ||||| || Sbjct 1952 GGTGATGTAATGGACTGGATTAAAAAGCCAGGTAAATTACTTAATAAAATATTAGATGGT 1893 Query 12680 TTTGGAATTAAT-TTAGATAGCTTTGGTATAACTAAAAGCGCTAGTTTACCTTTTGATAT 12738 | || | | | || | | |||||||| |||| || | || |||| |||| | Sbjct 1892 ATGGGCGTCGGTATGAGTTCG-TTTGGTAT--TGAAAAAGGCAACGTT-CCTTATGATCT 1837 Query 12739 GATGAAAGGAATGTTTGGCAAGCTTAAAAAAGCCGCTACCGATACATTCAAAAACTGGAT 12798 ||| || |||||| || |||||| ||| |||||||| | ||||| ||| | Sbjct 1836 AATGGGGGGTATGTTTAAAAAACTTAAATCAGCAGCTACCGACTTAATCAAATCTTGGTT 1777 Query 12799 GGAAGA---ACAAGGTGGAGATGGTG 12821 ||||| | ||||||| || |||| Sbjct 1776 TGAAGAAGCAGAAGGTGGCGAAGGTG 1751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138738984173832