Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650145.1_202016-05-23] 131 sequences; 6,361,046 total letters Query= NC_024355.1 Length=93794 Score E Sequences producing significant alignments: (Bits) Value seq34 161 6e-35 seq11 107 1e-18 >seq34 Length=2636 Score = 161 bits (178), Expect = 6e-35 Identities = 220/307 (72%), Gaps = 0/307 (0%) Strand=Plus/Minus Query 30241 ATGGAACATGGAGAACAGAAAATATAGGAGATAGTTATTCATACACACTGGATTGTAAGT 30300 |||| || |||||||| ||| | | | ||||||||||| | | || ||||| | Sbjct 2634 ATGGTACTTGGAGAACTGAATTTGTTGATAATAGTTATTCAAAAGAGTTTGAATGTAAAT 2575 Query 30301 GGGGAGATGAAACATTAATTTGGACACTTaaaaaaaTGTCTAAAGGTGGGACATTAGATG 30360 ||||| | ||||| ||| ||||| | || ||||||||||||||||| | | |||| Sbjct 2574 GGGGAAACGAAACGTTAGAATGGACTTTAAAGAAAATGTCTAAAGGTGGTTTAATTGATG 2515 Query 30361 TTTATCTTGACAACaaaaaaaTAGGTAGTTATGATTGTTATAGTGaaaatgctaaaacag 30420 | || || ||||| ||| || ||| ||||| ||||||||| ||| |||| | | Sbjct 2514 TATACCTAGACAATAAATTGATTGGTTCATATGAGTGTTATAGTAAAACAGCTACGAGTG 2455 Query 30421 aaaagaaaacacttactaaaaacctttcaaaaggtaaacATACATTTAAAGCAGTGTTTA 30480 | || | | | || ||| || | || |||||||||||| || |||||||| |||| Sbjct 2454 AGAAAATAGTAATTGCTAGGAATTTATCGAAAGGTAAACATGTTTTCAAAGCAGTATTTA 2395 Query 30481 CTGGAAAGAAAAATGGTGTTGATTATAAAAAATCAAAACCTTGTATGTATATAGGAACTG 30540 || || |||||| ||||||||| |||| ||| | |||||||| ||||||||| Sbjct 2394 GAGGTGCTAAGCCTGGTGTGGATTATAAAGAATCGAAAGCATGTATGTACGTAGGAACTG 2335 Query 30541 AAAAATC 30547 ||||||| Sbjct 2334 AAAAATC 2328 >seq11 Length=2611 Score = 107 bits (118), Expect = 1e-18 Identities = 228/337 (68%), Gaps = 20/337 (6%) Strand=Plus/Minus Query 26611 GACATGGTTGGTGGCGTTAAAAAAGGTCTTAATGGATTGATTAACGGTGTTAACTGGGTC 26670 |||||| | ||||||||| |||||||||| ||| | || ||||| ||| |||| || Sbjct 2495 GACATGATGGGTGGCGTTGAAAAAGGTCTGAATAGTTTAATTAAAGGTATTAATAAAGTT 2436 Query 26671 GGCGGAAAATTAGGTATAGACaaaaaaaT------ACC---TACATTATCTACTGGTACA 26721 || | |||| || | ||| |||| ||| || | |||| || |||||| Sbjct 2435 GGTTCTATGCTAGGCATGGGGAAAGAAATGATTAAACCAGTTAAACTATCAACGGGTACA 2376 Query 26722 GAATCTACACATACACAAAACTTTGTTAGAAATGGCGCTATTAGCACACCAACTTTAGCA 26781 ||| | | | | || | ||| |||||| || || || | || || ||||| Sbjct 2375 GAAGGTGC---TTCTGGTAATGTAGTTTCAAATGGTGCAATAAGTAGCCCTACATTAGCT 2319 Query 26782 ACAGTAAATGACAAAGGACCTGGTAATGGTACTGGTAGAAAT----GGACATCAAGAATT 26837 ||||| ||||| | || || ||||| | || | || ||| ||| ||||||| || Sbjct 2318 ACAGTGAATGATAGTGGTCCAGGTAACG---CTCG-AGGAATCGGAGGATATCAAGAGTT 2263 Query 26838 AATTCAACGTAAAAACGGTTCATTATTTGCACCACAAGGAAAAGATGTAGTAGTTCCATT 26897 | ||||| | ||||| || ||||||| |||||||||||||| | ||| || Sbjct 2262 AGTTCAAAAGAGTAACGGCTCGGTATTTGCTCCACAAGGAAAAGACGCTACAGTAATGTT 2203 Query 26898 AAATAAAGGCGATAAAGTTATTAATGGTAAAACTACT 26934 | |||||||||||| ||| ||||| ||| |||||| Sbjct 2202 AGATAAAGGCGATAGAGTAATTAACGGTCGTACTACT 2166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300015521005705