Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650145.1_202016-05-23] 131 sequences; 6,361,046 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq130 111 2e-19 seq44 86.0 6e-12 >seq130 Length=171689 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 ||| ||||| || | ||||| | ||| ||||| ||||||||||| ||||| || || Sbjct 140719 TCCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGA 140778 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || || || ||| || | ||||| || |||||||| | || || |||||||| || Sbjct 140779 AAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGG 140838 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || |||||||| || || || || | || || | |||||| Sbjct 140839 AATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCAC 140898 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||||||||| || | ||||| || || ||||||||||| Sbjct 140899 CTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATTTT 140949 >seq44 Length=96109 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 9090 TAAAGAG-CTGTATAAAACCGTTTGGGAAATGAAGCAAAGCACGCTGATCGGCATGGCTG 9148 |||||| ||||| |||||||| ||||| || || || | || | || | |||||| | Sbjct 81791 TAAAGAATCTGTACAAAACCGTATGGGAGATCAAACAGAAGGCGATAATTGACATGGCAG 81732 Query 9149 CGGATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTCGTAGCCGCACCAA 9208 | ||| | ||||| || ||||| ||| |||||| | ||| | | | | | || | Sbjct 81731 CCGATCGCGGCGCCTTCATTGACCAGTCTCAATCGCTGAACATTTACATGGAACAGCCTA 81672 Query 9209 CTTACGCTTTGATGTCCAGCATTCATTATTTAACTTGGAAAATGGGTTTAAAAACAGGCA 9268 | || || | |||| || || || | || ||||| | || ||||||| || Sbjct 81671 CATATGCCAAGTTGTCTAGTATGCACTTTTATGGCTGGAAGAAAGGACTAAAAACTGGAG 81612 Query 9269 TGTACTATTTGCGCACAAAACCCGCCGCTGAACCTATCAAATTTACAGT 9317 | || ||||||||||| ||||||| || || | ||||| |||||||| Sbjct 81611 TATATTATTTGCGCACCCAACCCGCTGCCGATGCCATCAAGTTTACAGT 81563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397572410120