Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650145.1_202016-05-23] 131 sequences; 6,361,046 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq44 105 8e-18 seq96 100 3e-16 >seq44 Length=96109 Score = 105 bits (116), Expect = 8e-18 Identities = 339/520 (65%), Gaps = 7/520 (1%) Strand=Plus/Minus Query 104267 GACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATG-TTCATTCACGC 104325 || |||||| || | ||||||| ||| | | |||||| ||| || || || ||||| Sbjct 83372 GATATTGATCGTGCCATGGAGACTTACAATTACATGTCC-AAGAAATTATTTATCCACGC 83314 Query 104326 AACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTAT 104385 || || || |||||||| |||| || | || |||||||| || ||||||||| | Sbjct 83313 CACTCCCACACTCTTCAACTCTGGAACTAAATTTCCTCAAATGTCTAGCTGCTTCCTTCT 83254 Query 104386 CGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAAT 104445 | | ||||| || || || ||||| | || || ||||| | ||||| | || Sbjct 83253 TGATATTAAGGATGATTCTATTTCTGGTATTTTTGACACCCTTACCCAATGTGCACTCAT 83194 Query 104446 CTCAAAGTGGGCTGGGGGTATTGGGAT-GCACATCCATGATGTGAGAGCCAATAAATCTC 104504 ||| || || || || || | ||| || || | | | ||| | || Sbjct 83193 TAGTAAGACAGCAGGAGGGATAGGTTTAGCA-ATACACAAAATACGTGCCTCCAGTTCAT 83135 Query 104505 GTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACG 104564 ||||| || |||||||| || || |||| ||||| || ||||| | |||| || | Sbjct 83134 ACATTCGCGGCACAAATGGGCATTCCAATGGGATTATACCTATGCTCAGAATATTCAATG 83075 Query 104565 CCACAGCGCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATC 104621 || || || ||||| |||| | ||| | |||| || || | || |||| | Sbjct 83074 ATACTGCTCGTTATGTTGATCAGGGAGGGGGAAAAAGAAAAGGTTCATTTGCCATCTACC 83015 Query 104622 TTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACG 104681 | ||||||||||| || ||||| | || ||||| || | || ||||| ||| | Sbjct 83014 TAGAGCCATGGCATGCTGATATTTTTGAATTCCTAGATCTACGAAAAAACCATGGTTCAG 82955 Query 104682 AGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGA 104741 ||||| | || | || | |||| || | ||||| ||||| || |||||||| | Sbjct 82954 AGGAGTCAAGGGCTAGGGACTTGTTCTATGCATTGTGGATCCCAGACCTTTTCATGAAAA 82895 Query 104742 GAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA 104781 | ||||| | | || || ||| || | | || ||||| Sbjct 82894 GGGTTGAAGCTAATGAAAACTGGACTTTGATGTGCCCAGA 82855 >seq96 Length=29117 Score = 100 bits (110), Expect = 3e-16 Identities = 283/424 (67%), Gaps = 18/424 (4%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 || || ||||| | ||||| || |||| || ||||| | ||||| | || || ||| Sbjct 12171 TCTAGTATATCTGCACGATTAGTACCGGCCATCACAACTACACCTGATG-ATGATTTAAA 12113 Query 9617 -CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG-----CT 9670 |||||||| ||| ||||| ||| || | || | ||||| |||||| || | | Sbjct 12112 GCCATCCATTTCTACCAAAATTTGATTTAATGTATTTTCCCTTTCATCGTTAGAACCACC 12053 Query 9671 GGCATA-CCACCAG-CACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 9728 |||| | || || | || | || ||| || | |||||| || |||||||| |||| | Sbjct 12052 GGCAAAGCCTCCTCTCGCT-CTTTTCTTACCAATGGCATCTATTTCATCAATAAAGATTA 11994 Query 9729 TGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788 | | || ||||| | ||| ||||| ||||||| |||||| ||| ||| | || Sbjct 11993 TTGAAGGGGCATTTTTTCTAGCATTCTCAAATAGATCCCTTACACGACTGGGGCCGATAC 11934 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGAT-GAAGGGGACATTAGATTCA 9847 |||| || | ||| | || | || | || || | | ||| || || | | ||| Sbjct 11933 CAACGAATACCTCAATGAAATCTGATCCAGAT-ATGGAGTAGAATGGAACTTGGGCTTCC 11875 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9907 || |||| || ||| ||||| || ||||||||||| || || || || || Sbjct 11874 CCGGCAACAGCCTTGGCAAGAAGCGTTTTACCCGTACCAGGAGGTCCACAAAGCAGTGCG 11815 Query 9908 CCTCGTGGAATCTTGGCGCC---ACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCC 9964 ||| ||| || |||||||| |||| || |||| || || | || |||||||| Sbjct 11814 CCTTTTGGTATTTTGGCGCCCAAACTTTTAA---ATCTTTCTGGATTTTTGAGAAAATCT 11758 Query 9965 ACAA 9968 |||| Sbjct 11757 ACAA 11754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259844910440