Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650145.1_202016-05-23] 131 sequences; 6,361,046 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq84 439 8e-118 seq58 192 2e-43 seq130 179 1e-39 seq81 96.9 1e-14 seq44 95.1 4e-14 seq114 87.8 5e-12 >seq84 Length=66450 Score = 439 bits (486), Expect = 8e-118 Identities = 986/1466 (67%), Gaps = 39/1466 (3%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| || || ||||| || || ||||| || ||||||| |||||| ||||||| | Sbjct 58903 GCTATTGGGATTGATTTGGGAACCACTTACTCATGTGTTGGCGTTTGGAAAAATGAAACT 58844 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 |||||||| || || ||||||||||| ||| | ||||| || || || ||||| || || Sbjct 58843 GTAGAAATTATAGCCAATGATCAAGGCAACCGTACAACTCCGTCTTATGTTGCCTTCACT 58784 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || ||||| || |||| || | || |||||||| | |||| ||||| |||| Sbjct 58783 GATGTGGAGCGATTGGTTGGCGACGCCGCCAAAAATCAGGATGCTAGAAATCCTGAAAAC 58724 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || ||||||||||| || || | || || |||| | ||| | | ||| | Sbjct 58723 ACAGTTTTTGATGCAAAAAGATTGATAGGGAGAAAGATCAATGATCCCTGCATCCAAAGT 58664 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 ||| ||||||| | || |||||||||| | | |||||| || | || || Sbjct 58663 GATATAAAACACTGGCCATTTACTGTTGCGGCTGGACCAAATGATAAGCCTGTGATCAAG 58604 Query 349499 GTTGAATATAAAGGTGAA-CAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTTT 349556 || ||| | | |||||| | ||| | || |||| || ||||| || || ||||| Sbjct 58603 GTACAATTTCAGGGTGAAACTAAATCC--TTCCACCCAGAGGAAATATCTTCTATGGTCC 58546 Query 349557 TAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTA 349616 | || |||||||||||||| ||| | ||||| || | ||| | || ||||||||| Sbjct 58545 TCACCAAGATGAAGGAAATTGCAGAATCTTATTTGGGAAAGACAATCTCTAATGCTGTTA 58486 Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676 | |||||||| || |||||||| ||| | || || || || || || ||||| | || Sbjct 58485 TCACTGTACCCGCTTATTTTAACGATTCTCAACGACAGGCCACTAAGGACGCTGGTACCA 58426 Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736 |||| |||||||||||| | | || || |||||||| |||||||| |||||||| |||| Sbjct 58425 TTGCTGGGTTAAATGTTATGCGTATTATCAATGAACCAACTGCTGCCGCAATTGCCTATG 58366 Query 349737 GGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTA 349796 | | || || | || ||||||||| | | ||||| ||||| || ||||| | Sbjct 58365 GTATGGACAAGAAAGGTACTTCTGAAAAAAATGTGTTGATTTTCGATTTGGGCGGTGGCA 58306 Query 349797 CTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTG 349856 |||| ||||||||| | |||| | ||||| || |||||||| || || || || | Sbjct 58305 CTTTCGATGTATCAATTTTAACTATCGAAGATGGCATTTTTGAGGTAAAGGCCACACAAG 58246 Query 349857 GTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT--GTTAA 349914 ||||||| || | || || || || ||||| || | | | || |||| || | Sbjct 58245 GTGATACCCACTTGGGCGGTGAGGACTTTGACAACAGATTGG--TCAACTTTTGCGTAGA 58188 Query 349915 AGAATTTAAGCGTCAAGCTAAAATTG--------ATATTGGAGATAATCCTAGAGCAATG 349966 || |||||||| || | ||| | ||||| | ||| | ||| | Sbjct 58187 TGACTTTAAGCG--AA---AGAATGGCGGGAAGAATATTTCAACCAATAGACGTGCATTA 58133 Query 349967 CGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACT--ACCCAAA 350024 ||| | || ||||| |||||||||||||| || ||||||| | ||| || || Sbjct 58132 CGTAGACTTAGAACACAATGTGAACGTGCTAAACGCACCTTATC--CCACTCAACACAGG 58075 Query 350025 CCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTC-TTTTCATCTATTACACGT 350083 || | |||| | || || | |||||||| || | | || || | || || | Sbjct 58074 CCACGATTGTTGTAGAAGCTATATTTGATGGCATCGACTACAGTTGCAAC-ATCACTAGG 58016 Query 350084 GCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGA--TCCTGTGGAAA 350141 || | || || || | ||| || | || | | |||| | | || || |||| Sbjct 58015 GCCAGATTCGAGGAGCTCTGTGCCGAAATGTTCAAA--AACACTTTAATCCCAGTCGAAA 57958 Query 350142 AAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTG 350201 ||| ||| |||||| | ||| || || ||||| ||||||| || | || || | Sbjct 57957 AAGCCTTAGCTGATGCAGATATGGATAAGAAGCAGATCCATGAAGTGGTACTTGTAGGAG 57898 Query 350202 GTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC 350261 |||| || ||||| || || | || || || | || ||||| ||||||||||||| Sbjct 57897 GTTCGACCCGTATCCCTAAGATACAGCAATTGATTAAGGACTTTTTCAATGGCAAAGAAC 57838 Query 350262 CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTA 350321 | | | ||||||||| ||||| ||||| || || ||||| || ||||||||||| | | Sbjct 57837 CCTGCAAATCAATTAACCCAGACGAAGCAGTAGCCTATGGCGCGGCTGTTCAGGCTGCAA 57778 Query 350322 TTTTATCTGG-AAATAAGAGTTCT---AAAATTGATGATCTATTACTACTAGATGTAACT 350377 ||||| |||| || || ||| || | | ||| || | |||||||||| ||| Sbjct 57777 TTTTAACTGGCGAACAA----TCTAGCAAGGTCCAAGATTTACTGTTACTAGATGTCACT 57722 Query 350378 CCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAAT 350437 ||||| || || ||| | || || | || | || ||||| || || || || |||||| Sbjct 57721 CCACTGTCACTAGGACTTGAGACCGCCGGCGGTGTTATGACCGTGCTGATACCCAGAAAT 57662 Query 350438 AGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCG 350497 | |||| | || | || ||| ||| ||| | || || | |||| || | | | Sbjct 57661 ACTACTATCCCCGCCAAGAAGGAACAAGAATTTACAACCAATGAAAATAACCAAACGGGG 57602 Query 350498 GTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGA 350557 || | || || || || ||||| |||||| || || || || ||| ||| || Sbjct 57601 GTTATGATCCAGGTCTTCGAAGGAGAACGTTCTATGACATGTGACAACAATTTACTAGGC 57542 Query 350558 GAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCT 350617 |||| | | || || || || || ||||||||||| |||||| ||||| | Sbjct 57541 AAATTCCATTTGACTGGCATACCTCCTGCTCCAAGAGGAGTTCCCCAGATTAAAGTCACC 57482 Query 350618 TTCGATATTGATTCAAATGGTATTTT 350643 || || || ||| | |||||||| || Sbjct 57481 TTTGACATCGATGCCAATGGTATATT 57456 Score = 246 bits (272), Expect = 9e-60 Identities = 586/875 (67%), Gaps = 13/875 (1%) Strand=Plus/Plus Query 182925 AAAATACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACACCTCGTGGCATT 182984 || |||||||| | || | ||||| | |||| |||||| ||||| |||| ||| Sbjct 57456 AATATACCATTGGCATCGATGTCAAAGGTGACTTTAATCTGGGGAACTCCTCTTGGAGCA 57515 Query 182985 GGTGGAATTCCAGTTAAAGTAAATTCACCTAATTTATTATTATCTTTAGTTCTTGCTCTC 183044 || || || ||||| ||| |||| |||| | ||| || || || | | | Sbjct 57516 GGAGGTATGCCAGTCAAATGGAATTTGCCTAGTAAATTGTTGTCACATGTCATAGAACGT 57575 Query 183045 TCGCCTTCATATACTTGAATAGTAACTGCTGGCTGATTATCACTATAAGTAGAAAAAACT 183104 || ||||| | || || || |||| | | || |||| || || | ||| || Sbjct 57576 TCTCCTTCGAAGACCTGGATCATAACCCCCGTTTGGTTATTTTCATTGGTTGTAAATTCT 57635 Query 183105 TGCTTTTTATTAATAGGAATAGTTGAATTTCGCGGAACAATTACAGTCATTACTTCTCTG 183164 || | || || || ||||| | ||||| || | | || ||||| || | | | Sbjct 57636 TGTTCCTTCTTGGCGGGGATAGTAGTATTTCTGGGTATCAGCACGGTCATAACACCGCCG 57695 Query 183165 GCAGTTTCTAATCCTAATGATAATGGTGCTACATCTAGTAATAATAAATCT--GATGTTT 183222 || || || | ||||| ||| | ||| | ||||||||||| | ||||||| || || Sbjct 57696 GCGGTCTCAAGTCCTAGTGACAGTGGAGTGACATCTAGTAACAGTAAATCTTGGACCTTG 57755 Query 183223 TATCT-GATTTAATATCACTTAAAATTGCAGCTTGAACAGCTGCACCATATGCAACAGCT 183281 || |||| || ||||||||||||| |||||||| || ||||| || || ||| Sbjct 57756 ---CTAGATTGTTCGCCAGTTAAAATTGCAGCCTGAACAGCCGCGCCATAGGCTACTGCT 57812 Query 183282 TCATCTGGGTTAATTGAACGAGATAATTCTTTGCCATTAAAAAATTCTGAAAGCATTTGT 183341 || |||||||||||||| | |||||||||||| ||||| || || || ||| Sbjct 57813 TCGTCTGGGTTAATTGATTTGCAGGGTTCTTTGCCATTGAAAAAGTCCTTAATCAATTGC 57872 Query 183342 TGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACTACTTCATCGATATTACTTTTA 183401 || || || || || | || ||||| || || | ||| ||||||| ||| | | ||| Sbjct 57873 TGTATCTTAGGGATACGGGTCGAACCTCCTACAAGTACCACTTCATGGATCTGCTTCTTA 57932 Query 183402 CTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTCCATAGTTTTTCTAAATAAATCT 183461 || | || ||| ||| ||||||| || ||| | ||| ||| | || | || Sbjct 57933 TCCATATCTGCATCAGCTAAGGCTTTTTCGACTGGGATTAAAGTGTTTTTGAACATTTCG 57992 Query 183462 ATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATG-aaaaaaaGTCAATACCATTATA 183520 ||| | ||| || ||||| || |||| | | | || || |||| || |||| | | Sbjct 57993 GCACAGAGCTCCTCGAATCTGGCCCTAG-TGATGTTGCAACTGTAGTCGATGCCATCAAA 58051 Query 183521 TAAGGAATCAATTTCAATCGATGTTTGTGTAGATGATGATAATGTTCTTTTAGCTCGTTC 183580 || | || | |||||| | ||||| || ||||| || | |||||| ||||| Sbjct 58052 TATAGCTTCTACAACAATCGTGGCCTGTGTTGAGTGGGATAAGGTGCGTTTAGCACGTTC 58111 Query 183581 ACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTATCTGTAATA-TCTT--GTTTATG 183637 |||| |||||| |||| |||||||| | | ||| || |||| |||| || Sbjct 58112 ACATTGTGTTCTAAGTCTACGTAATGCACGTCTATTGGTTGAAATATTCTTCCCGCCATT 58171 Query 183638 TTTTCTTTTAAATTCA-GTAATAAAATGTTGAAGTAATCTTGTATCAAAATCTTCACCAC 183696 |||| ||||| ||| || ||| |||| | ||||| | ||||| || ||||| | Sbjct 58172 CTTTCGCTTAAAGTCATCTACGCAAAAGTTG-ACCAATCTGTTGTCAAAGTCCTCACCGC 58230 Query 183697 CTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATATTTAAAA 183756 | || || ||||| || || || || || ||||| || || ||||| ||| |||||| Sbjct 58231 CCAAGTGGGTATCACCTTGTGTGGCCTTTACCTCAAAAATGCCATCTTCGATAGTTAAAA 58290 Query 183757 TTGATACATCAAATGTACCACCACCCAAATCAAAA 183791 |||||||||| || || ||||| |||||||| ||| Sbjct 58291 TTGATACATCGAAAGTGCCACCGCCCAAATCGAAA 58325 >seq58 Length=16237 Score = 192 bits (212), Expect = 2e-43 Identities = 239/327 (73%), Gaps = 3/327 (1%) Strand=Plus/Minus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 ||||||||| || || ||| | | | ||| | ||||| | |||| ||| | || Sbjct 5476 AAAATGAAGAGCATGGCCGAAAACTTTCTCGGTCAGACAGTTAAAAATGCCGTTGTGACA 5417 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || || |||||||||||||||||||| || || |||||||| || ||||| Sbjct 5416 GTTCCTGCATATTTTAATGATGCCCAGCGCCAAGCTACCAAAGATGCAGGTCAAATTGCT 5357 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || || ||||| || | || | ||||||||||| || || || ||||| ||||| ||| Sbjct 5356 GGTTTGAATGTATTACGTATACTCAATGAACCCACAGCCGCTGCTATTGCTTATGGTCTT 5297 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 || || | | ||| ||||||||||||| | | | |||| | ||||||||||||||| Sbjct 5296 GACAATAAGGATGA---AGAAAAAAATATTTTGGTCTATGATCTCGGTGGTGGTACTTTT 5240 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 ||||| || ||||| ||| |||| | || | |||||||| | ||| || | || ||| Sbjct 5239 GATGTTTCCCTACTTACAATTGACAACGGTGTATTTGAAGTCATAGCGACATCAGGAGAT 5180 Query 349862 ACACATCTTGGTGGAGAAGATTTTGAT 349888 || || || || || |||||||||||| Sbjct 5179 ACTCACCTCGGCGGTGAAGATTTTGAT 5153 >seq130 Length=171689 Score = 179 bits (198), Expect = 1e-39 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 ||||| |||||||| | || | ||| | ||||||||||||||||||||| || || || Sbjct 28833 CCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGAC 28892 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || || ||||| ||||| || |||||||| || || ||||| |||||||| ||| Sbjct 28893 AGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGGA 28952 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 ||||| || ||||||||||| ||||| || ||||| || || | |||| || || ||| Sbjct 28953 ATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTACT 29012 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || | ||| | || || || || |||||||| ||||| || ||||| Sbjct 29013 TCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCAT 29059 Score = 170 bits (188), Expect = 6e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 140535 TGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGT 140594 ||||| || || || ||||| || |||||||| || | ||| || || || || | |||| Sbjct 140744 TGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTGT 140803 Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 ||||||||||| ||||| ||||| ||||| || |||||||| || || || ||||| ||| Sbjct 140804 TTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGAATCTTA 140863 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || |||||||| ||||| | |||| ||||| || ||||| || | || || || || Sbjct 140864 GCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGTA 140923 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 |||||||||||||| || |||||| Sbjct 140924 AGTGTTTTTACAAATATTTGCATT 140947 >seq81 Length=82541 Score = 96.9 bits (106), Expect = 1e-14 Identities = 76/87 (87%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CCTC 423822 |||| ||||||||||||||| |||||||| ||||||||||| |||| |||| | || | Sbjct 40003 AGCACGGATGCCCGAGTGGT-TAAGGGGGTGGACTTAAGATCCTCTGGTCGAAGGACCGC 40061 Query 423823 GTGGGTTCAAACCCCACTCCGTGCATT 423849 |||||||| |||||||||||||||||| Sbjct 40062 GTGGGTTCGAACCCCACTCCGTGCATT 40088 >seq44 Length=96109 Score = 95.1 bits (104), Expect = 4e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 204910 CATAAATTACTAGACTTAATAGTACCAAGGTTTTGTTGATTTGTTTTATAATTAACAGCA 204969 ||||| || ||||||||||||||||| | ||| | ||||||| || |||||| ||| Sbjct 82630 CATAAGTTGCTAGACTTAATAGTACCTATGTTCTTCTGATTTGACTTGTAATTACAAGCG 82689 Query 204970 TCTTTATATAACATATATGGTGTACCTGTTTCCATTTGCGAATCTAAAAT 205019 || || |||||||| || || || |||||||| |||||||| | ||| || Sbjct 82690 TCCTTGTATAACATGTAAGGAGTTCCTGTTTCAATTTGCGATTGTAAGAT 82739 >seq114 Length=113273 Score = 87.8 bits (96), Expect = 5e-12 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAGCC-TC 423822 |||| ||||| ||||| |||| |||| | |||||| ||| |||| ||| ||| |||| || Sbjct 47716 AGCACGGATGGCCGAGCGGTCCAAGGCGCCAGACTCAAGTTCTGGTGGGCGAGAGCCCTC 47775 Query 423823 GTGGGTTCAAACCCCACTCCGTGCATT 423849 ||||||||||| |||||| |||||||| Sbjct 47776 GTGGGTTCAAATCCCACTTCGTGCATT 47802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515251856740193