Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650145.1_202016-05-23] 131 sequences; 6,361,046 total letters Query= NC_028821.1 Length=40670 Score E Sequences producing significant alignments: (Bits) Value seq23 691 0.0 seq11 259 1e-64 seq34 118 3e-22 >seq23 Length=1076 Score = 691 bits (766), Expect = 0.0 Identities = 801/1076 (74%), Gaps = 4/1076 (0%) Strand=Plus/Minus Query 16523 CTGATAGGACTCGTCCGTTTACACCTTGGTTCTGTTTTACAAATACGTCTATTTGATATA 16582 |||||||||||||||| || | ||| || |||||||| || | |||||||| ||| Sbjct 1076 CTGATAGGACTCGTCCATTAATGCCTGTATTTTGTTTTACGAAGATATCTATTTGGAATA 1017 Query 16583 AATATTCATACGTCAAATTATCATTGTCAGCAAAATCATCAGGCTTTGGTGTGTCTAATG 16642 ||||| || |||| ||| || | || ||||||||| ||||| |||||||||| || Sbjct 1016 GGTATTCGTATGTCATATTGTCGTCATCTGCAAAATCAGAGGGCTTAGGTGTGTCTATTG 957 Query 16643 GATCAATGACAATCACTATATCTT--TGATTTCTTGCGCGTTTGGATAATCGAAGAATTT 16700 | || |||||||| || || || | |||||||||| ||||||||||||||| | ||||| Sbjct 956 GGTCTATGACAAT-AC-ATGTCGTCTTGATTTCTTGTGCGTTTGGATAATCGTAAAATTT 899 Query 16701 AATGTTATTTTTGGGGACATGTTTCATTATTTCTTCATTATTTATAATCGCATCGTATAT 16760 ||| | ||||| || | ||||| ||||||| ||||| | ||||||| | |||||| Sbjct 898 AATATCGTTTTTATTAACGTTGTTCATGATTTCTTGATTATCTGTAATCGCTTTGTATAT 839 Query 16761 CTTTGTTGTGATATCTTCCATATCTACACCAGCCTTTTCATTTCTTCTTTAACCGTTTGA 16820 ||| | |||| ||||||| |||||| |||| | ||||||||||| || ||| | Sbjct 838 CTTCATCATGATGTCTTCCACTCTTACACCCTCCTTCTGATTTCTTCTTTCACTGTTCTA 779 Query 16821 AAGTAGGTTTCGCGTCCTTCTCGCATTGCACGTTCAATTACGCCTTTACCTGCTGTATTT 16880 || || ||||| | ||||| ||||| || ||||||||||| |||||||| || ||||| Sbjct 778 AAATAAGTTTCTCTACCTTCACGCATAGCTCGTTCAATTACACCTTTACCAGCGGTATTA 719 Query 16881 ACCCATTTCCCTGAACGATCAAAGTGACCATATTCATTTAGATGAATAATTCGATAGCGC 16940 ||||| || |||||||| || | |||||| ||||||| ||||| || |||| || || Sbjct 718 ACCCACTTACCTGAACGGTCGTAATGACCAAATTCATTAAGATGTATTATTCTGTAACGT 659 Query 16941 TGTTTGGGACCACGCCAATGAATTTTAACAGTCCTTACACCGTTTATCGTCGTCGGTTTT 17000 || || |||||||||||||||| |||||| || | ||||| || ||| | ||||| Sbjct 658 TGCTTAGGACCACGCCAATGAACTTTAACTGTACGCACACCACCAATAGTCATTGGTTTA 599 Query 17001 GAAAGTGTAGTTTCTTCTACCGACTCTCCAGTGTCTTTAAAAGTTTTCATATTATTTTTG 17060 || | | |||||| || || || ||||| |||||||| | ||||| |||| Sbjct 598 GATAAAGAAGTTTCAGACACAGATTCACCAGTATCTTTAAATGAACCCATATCTCTTTTT 539 Query 17061 ATAATACTTACAACTTTGTTTCCGCCTTTGGTTAATGCATAATCAGTGATACGTTTGGTT 17120 ||||| ||||||||| | |||||||| ||||| ||| ||||||| |||||||| ||| Sbjct 538 ATAATCTGTACAACTTTTTGACCGCCTTTAGTTAAAGCAAAATCAGTTATACGTTTAGTT 479 Query 17121 GCAGATTTTCCATATTGCTTTTCTAAATATGCTATAAGTTCTTTATCACCTTTGATTGAT 17180 |||||||| ||| | | |||||||||||| || |||| ||| ||||| ||||| | ||| Sbjct 478 GCAGATTTCCCAAACTTCTTTTCTAAATAAGCGATAATTTCCTTATCGCCTTTAACAGAT 419 Query 17181 ATCCCTATGATTCTTCACCTACCACTTTGATGTAATTAGGAGTTTTAGCAGGCGCAACGT 17240 || || ||||||||| ||||| ||||||||||||||||| |||||| | || || | Sbjct 418 ATTGTCATTCTTCTTCACCAACCACCTTGATGTAATTAGGAGTCTTAGCAAGAGCCACAT 359 Query 17241 TCTTAATGTCAAAAGTTAACCCAGCATACATTCCATTTTTAATTTCAAATACGTGATTGA 17300 | || || | |||| ||||| ||| || || ||||||||||||||| ||||| | Sbjct 358 TTTTTATATTAAAAAACAACCCTTTATAAATACCGTTTTTAATTTCAAATGTTTGATTAA 299 Query 17301 CTGTAGGTAGAAAGTCAGGCTGTGCATTTCTAATATTAATAGTTACAGAACGTTTACTCG 17360 | |||||| ||| | || |||| ||||||||||| | || || || | |||||| Sbjct 298 CATTAGGTATAAATTGGGGTTGTGGGTTTCTAATATTTAATGTGACTGACCTTTTACTAA 239 Query 17361 TTTCTAAATTTCCTAATTGTACATCTTTTTGCGTAGGTTCGTATAGACCAGCGAAGCAAC 17420 ||||| || |||||||| ||||||||||| |||||||| |||| ||| |||| || | Sbjct 238 GCTCTAAGTTCCCTAATTGAACATCTTTTTGTGTAGGTTCATATAAGCCACCGAAACAGC 179 Query 17421 TAAAAACTTCTTCCCAGTTACCCGCTCCTGCTTCAGGTCCGTTATTTGAAACTGAATAAA 17480 || |||||||| | | | | ||| ||||| || || | | | | ||||| Sbjct 178 TATAAACTTCTACTGGCTCATTCATTCCAGCTTCTGGACCATCGCTCATGATTTCATAAA 119 Query 17481 AAGCAACCCTATAATCAAGCTCGTTAAGATTCATCGGCTATCACCTCGATGTTATCTTTT 17540 | | ||| || |||| | | |||||||||||| |||||||||| | ||||||| Sbjct 118 ACGAAACTCTGAAATCTAATTGATTAAGATTCATCATCTATCACCTCTAAGTTATCTGAA 59 Query 17541 CGCCACTTAACTAGATTGCTTCTAAGTGTTTGTATAAGTTTCATTGATGATGCAGG 17596 ||||| ||| || || ||||| | |||||||| || ||| |||||||| || Sbjct 58 CGCCATTTAGTTAAATCACTTCTTAACGTTTGTATTAGAGCCATAGATGATGCTGG 3 >seq11 Length=2611 Score = 259 bits (286), Expect = 1e-64 Identities = 661/983 (67%), Gaps = 35/983 (4%) Strand=Plus/Plus Query 9607 AATTAATATTT--AATTTGTGTCTTAATAAAGGGTTAATGGTGTCTTTAGAACCGTT--A 9662 |||||||| || || || ||||||| || ||||| || ||| ||||| || | Sbjct 11 AATTAATAATTTGAACTTATGTCTTAGCAATGGGTTGATTACGTCAGAGGAACCATTGTA 70 Query 9663 AATATTTTAAAGTAACGAATATTGTGTTTATATTTAACTTCATCACTTCCTATAACACCT 9722 |||||| || | || ||| || || || |||| || ||| ||| ||||| Sbjct 71 AATATTGAAACTTGTCG--TATCATGCTTGTACTTAATATCTTCATAAGCTAACACACCG 128 Query 9723 TGTTCAAACTGCCAACTTTCATCAGTCCAACTAAATTCAGAAGTGTCTTTTAATGATTCT 9782 ||||||||||||| | || || ||||||| | | ||| ||||| ||||||||| Sbjct 129 CCTTCAAACTGCCAATCTCCACTAGATAAACTAAACTGATCAGTTTCTTTAAATGATTCT 188 Query 9783 GCATATCCTTTGTAGACAGAGTAAGTCACCTCAATAAGTCCAAATTGACTT-GTTAGGTT 9841 | ||| ||||| | || |||| || ||| |||| || ||| || |||| | Sbjct 189 GAATAACCTTTAAATACTACAAAAGTTACTGCAA-AAGTAGCAAATGAATTCGTTAAACT 247 Query 9842 TTCATTACTCACTCCCTCTGGTATAA-CTGCATACTTTTTACCTGGCATATCTGAATGCC 9900 ||| |||| || | | | |||| ||||||| || ||||| |||| ||| || |||| Sbjct 248 TTCGTTACCATCTTC-TGTACAATAAACTGCATATTTCTTACCAGGCAAATCAGAGTGCC 306 Query 9901 ATACGAAATAAGGATCTCTCCTATTTATCAATTGACGT---AACTTTTCTTTTGCTAATC 9957 | ||| ||||||| || | || | |||| || | ||||||| ||| |||| Sbjct 307 AAACGTAATAAGGTTCACGTCTG---AACAATAAACCTCTTAACTTTTGTTTAATCAATC 363 Query 9958 TATATTCTTTATAATCCATACCTTTATATGAAAATCTCAGTATCAAATTAAAAGGACCGA 10017 | | ||| | ||| |||||| ||||||| | | |||||||||||||||||| | Sbjct 364 TTAAATCTGTTGTATCATGACCTTTGAATGAAAAGTTTAATATCAAATTAAAAGGACCAA 423 Query 10018 AATTCATCGGTCCTTGTAAAACGCCATCGCTACCATTAACTTCAATCTGATTAGACTTTC 10077 | | || || ||| || ||||| | ||||| | ||||| | | | | |||| Sbjct 424 ACGAATTTGGCCCCACTAATACTCCATCTGTTCCATTCATTTCAA-CAGTGTTGGCTTT- 481 Query 10078 TA--TCTAAATCCTCTTCTTCAAATTCTAGAAACTTAAGATGAGGAAGGTCCGTTAGTGT 10135 || || | | | || || || || |||||||| | | ||| | ||| |||||| | Sbjct 482 TACTTCGACACCTTCCTCAATGAAATCAAGAAACTTCAAGTTAGGTATGTCGGTTAGTTT 541 Query 10136 TTCTTCGAAATGATCGTTAAATAtttttacttttttattttCCAATTTATAA--ACCTCC 10193 | | | || ||| ||||||| ||||||| || |||| |||| || |||||| Sbjct 542 TATGTTTATATCATCATTAAATAACTTTACTTCCTT--TTTCAAATTAGAAAGCACCTCC 599 Query 10194 CTGGCTATAAGCAGCGAGTCTTAACCTTGAACCTTGTGCCTGACTTACATCGCGTTCTGA 10253 | |||| || | | | | | |||||| || ||| | ||| ||| Sbjct 600 CATATTATATGCCATCATTTGTGCTCGTTTACCTTGCGCTCTACTCATATCATTTTCACT 659 Query 10254 AAAACCTTTCGGTTGTTTTTCAATATTTTCATTACTTCGTGCTATTTCCATTAACACGTT 10313 || ||| | |||| || ||| || || | |||||||| ||| |||| ||| | | | Sbjct 660 AACACCAGTTGGTTTTTGTTCGATGTTCTTATTACTTCTTGCAATTTGCATAAGAGCATC 719 Query 10314 TATTTGTTTCTGTTGATTTTCTATCATTTGTAGTAGCAATTCTGCGTTATCA--ACTGTA 10371 || |||||||||||| || | |||||||| || | | ||||| ||||||| ||||| Sbjct 720 TAGTTGTTTCTGTTGGTTAGCAATCATTTGAAGCAATAGTTCTGTGTTATCATTACTGT- 778 Query 10372 TTACTAGTAACACTAG---GTGTACGTAATTGGTTAGGTCGTTTATTTCTGTTATTTCCA 10428 |||| | || ||| ||||||| | ||| ||||||||||| ||| | ||||| || Sbjct 779 -TACTTTCACCAGTAGATGGTGTACGCATTTGATTAGGTCGTTTGTTTTTCTTATTACCT 837 Query 10429 -CTAATTTTACTCGCAGCAAGATGTAACAATTTCATCGCATCTGATTGTCTGCTTGGATC 10487 ||| | || || ||| | | | || ||||| || || |||||||||||||| || Sbjct 838 TCTATTCTTTGTCT-AGCTATAGCAAGTAACTTCATTGCGTCAGATTGTCTGCTTGGGTC 896 Query 10488 TGTAGGGATTACAATTTCTGGATAACCCCCTTCAGC-AAGTTGATACATTCCCGATGTAT 10546 |||||| ||||||| |||||||| || |||| || || ||| || | || || | || Sbjct 897 TGTAGGTATTACAAATTCTGGATGTCCTTCTTCTGCTAAATTG-TATAAACCAGACGAAT 955 Query 10547 TAATAACTCCGCCTGTAGCATAA 10569 |||| | ||| || || |||||| Sbjct 956 TAATCAATCCACCAGTGGCATAA 978 >seq34 Length=2636 Score = 118 bits (130), Expect = 3e-22 Identities = 321/480 (67%), Gaps = 20/480 (4%) Strand=Plus/Plus Query 8070 CCTAAATAATTCGTTGCTACTTCAATTGTTGGAATATCAT-CAAGTGTTTCTTTTAATTT 8128 |||||||| || || | ||||||| |||||| ||| | ||| |||| || | | || Sbjct 2118 CCTAAATAGTTTGTGGAAACTTCAACTGTTGGTTGATCGTTCAACTGTT-CTATAATATT 2176 Query 8129 CTTCTTTAACTCTGATTGGCT-TGTAAT--ATTATCATCATATATTGTAGGGGCTTCTGA 8185 ||||| || ||| | ||| | || |||||||||| ||| || || || || || Sbjct 2177 TTTCTTCAATTCT---TCGCTATCCAAGGCATTATCATCAAATACCGTTGGTGCCTCAGA 2233 Query 8186 TTTACC-ATATTGCTTATAATATGGAGACTTATACTCAGCATATACATGATAAATATCTT 8244 | || | | || | ||||| ||| || || || || |||||| |||| ||||||||| Sbjct 2234 GTGTCCGAAAATG-TCATAATTTGGCGATTTGTATTCTGCATATGCATGGTAAATATCTG 2292 Query 8245 TACCTTTAAGAACTGCAGTTAGATTTAAAACACTACTTTTACTAGTACCAACATACATGA 8304 | ||||| | ||||| |||| |||||| ||| | ||| ||| || || ||||| Sbjct 2293 TTCCTTTTAATACTGCCGTTAAATTTAATACAGTTGATTTTTCAGTTCCTACGTACATAC 2352 Query 8305 CTGGATTAGATTTCTTATAATCAATGCCGGATTTTTTCGATTTAAAAATTCCTCTAAAAG 8364 || || |||| |||||||| | || | || | |||| | | || | ||| Sbjct 2353 ATGCTTTCGATTCTTTATAATCCACACCAGGCTTAGCACCTCTAAATACTGCTTTGAAAA 2412 Query 8365 AATGTTTACCTTTTGATAA--TCCTTTAGCTAAAATCACTTTTTGC---GTCGAAGCATG 8419 |||||||||||| ||||| ||| |||| ||| ||| ||| | ||| ||| Sbjct 2413 CATGTTTACCTTTCGATAAATTCC--TAGC---AATTACTATTTTCTCACTCGTAGCTGT 2467 Query 8420 AGCGCTGTAACAATCAAAAGTCCCTTTGGACTTATCATCAATAAATACTTCGATTATTCC 8479 || ||||| ||| | | || | | |||| || | |||| || |||| || Sbjct 2468 TTTACTATAACACTCATATGAACCAATCAATTTATTGTCTAGGTATACATCAATTAAACC 2527 Query 8480 ACCTTTAGGTCCtttttttAGATTCCAAGTTAAGGTTTCATTCCCCCACTTACAATAAAA 8539 |||||||| ||| |||| | |||| ||| ||||| || ||||| ||||| | ||| Sbjct 2528 ACCTTTAGACATTTTCTTTAAAGTCCATTCTAACGTTTCGTTTCCCCATTTACATTCAAA 2587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130022197733904