Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20sp._20Xinjiang_20[genbank_20GCA_5F002095265.1_202017-04- 18] 215 sequences; 8,447,544 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq37 127 2e-24 seq207 102 1e-16 >seq37 Length=429747 Score = 127 bits (140), Expect = 2e-24 Identities = 457/702 (65%), Gaps = 12/702 (2%) Strand=Plus/Minus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 || || ||||| |||||||||| | | || | |||||||| || ||||| | | | Sbjct 382893 TCGAATTCGTCACCCCAAACATCATATAGACCTCGGCATTCATCTGGGCACATAAGTGTC 382834 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 54069 || || ||| ||| |||| ||||| || |||||||| ||||| | || ||| || Sbjct 382833 CAGTCAGCGTTTGCCTCAACTCTCTTCATGAACAGATCAGGTATCCATAATGC-ATAGAA 382775 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 | |||||| | || ||| || ||| ||| || || || | ||| |||| Sbjct 382774 CAAATCTCTAGCCCTTGCTTCTTCAGCTCCGTGATTTTTACGTAGGTCCAAGAAATCCAT 382715 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATA--ACTCCAGGCCGTTTGTTTCCT 54187 ||||||| ||||| |||||||||||||||| || | || || | ||||| || Sbjct 382714 GATATCAGCGTGCCATGGTTCCAAGTATATGG-CAAACGACCCCTTG-CGTTTCCCACCA 382657 Query 54188 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 54247 || ||||||| ||||| || || ||| ||| | |||||| || | |||||| ||| Sbjct 382656 CCTTGATCTACATATCTTGCAGTAGCATTGAAAATACGCAACATAGGTACAATACCGTTG 382597 Query 54248 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 54307 | ||| || || ||| || || ||||| || | || || || | | Sbjct 382596 CTTTTACCGTTTGTACCGCGAATGTAAGCACCACTTGCCCTGATTTTGTGGCATGCCAAA 382537 Query 54308 CCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 54367 ||||| || || || ||| ||| ||||||||| || | || |||||| | || || Sbjct 382536 CCTATACCTCCAGCACATTTGCTGATGAATGCGCATTGTGTCAAGGTATCAAATATTCCA 382477 Query 54368 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT- 54426 | | ||||| |||| | |||| || || || |||||||| | | | || Sbjct 382476 GCCAGGGAGTCATCTTTCATATCCAGTAAGAAGCAACTTGACATTTGTGGTC--TTGGTG 382419 Query 54427 TCCCGCATTA-AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 54485 |||| | | || | || || | || || || || |||||| | | || | | Sbjct 382418 TCCCTGAGAAGAAGAGTGTTGGCGTCGCATGAGTGAAATATTTTTGACTCATGAGGTGAT 382359 Query 54486 ACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 54545 | |||| || | | || || || | ||| || ||| ||| || |||||||||| Sbjct 382358 AAGTCTGTATTGTTCGTTCAATGTCACCACAATGTATCCCTGCTGACACCCGCATTAACA 382299 Query 54546 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAG 54605 |||| || ||||||||| | || | ||| || || | ||| || | ||||| | Sbjct 382298 TGTGTTGTGGTCTTTCAGAAACTTTATCGTTAATGCGTAGAAGGTATGACCTCTCCAATG 382239 Query 54606 TTTTAAAACCAAAATAGTTGTA-TGAAAAGTCTCGTTCGTAA 54646 |||| | ||||||||| | ||| || ||| |||| | |||| Sbjct 382238 TTTTCAGACCAAAATAATCGTACTGGAAA-TCTCTTGTGTAA 382198 >seq207 Length=758373 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 24602 |||||||||||||| ||||| |||| ||| || |||| | | ||| | || || ||||| Sbjct 377601 CTGGCTGCAAAAAAGGCCAAGACATTTTTGATGAAATGTGTCTCGCCAGGAGTGAGTTTT 377542 Query 24603 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662 | |||||| || | ||| |||| |||| |||||| | ||||||||||| |||| | Sbjct 377541 TCCCAATCCTTTAAGTCTGCTGATAAGTCCAATTCTTCAGCAGTCCAAAATGACGCCTGT 377482 Query 24663 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAA 24708 || || || ||| | ||||| |||| | || | || ||| ||| Sbjct 377481 GCTTTCTTGTACCACTCCCAGAAGTCAGGGTACTTGATCGGATAAA 377436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720004373200