Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20sp._20Xinjiang_20[genbank_20GCA_5F002095265.1_202017-04- 18] 215 sequences; 8,447,544 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq207 105 7e-18 >seq207 Length=758373 Score = 105 bits (116), Expect = 7e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 117043 GGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTG 117102 ||| |||| || || || |||||| | || |||||||| |||||| || || || || Sbjct 377979 GGTTGCCTATGCAGCTGTTGAGGGCATATTTTTTTCGGGAAGTTTCTGTGCTATTTTCTG 378038 Query 117103 GCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGA 117162 ||| |||||||| || || ||||| ||||| || |||||||||||||| || || || || Sbjct 378039 GCTGAAGAAACGTGGTCTTATGCCAGGCCTTACCTTCAGCAACGAGCTGATTTCAAGAGA 378098 Query 117163 CGAGGGTCTGCATTGCGACTTTG 117185 || || || ||| ||| |||| Sbjct 378099 TGAAGGACTTCATGCCGATTTTG 378121 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGT-GCAAACGCTCAAGGAAAA 40775 || ||||| |||||| | || || || ||| |||| | | ||||| |||||| ||| Sbjct 498953 GGTAAAACTATCACCTTAGAGGTGGAGCCCAGTGACACTATCGAAAACG-TCAAGGCAAA 499011 Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835 || | ||||||||||| || ||| | || |||||||| | || | ||| || ||||| Sbjct 499012 GATCCAGGACAAAGAGGGTATTCCCCCAGATCAGCAACGTTTGATTTTCGCCGGTAAACA 499071 Query 40836 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 ||| || || | || || ||| ||||||||||||||||| || || || ||| | Sbjct 499072 GCTCGAGGATGGCCGTACACTCTCTGACTACAACATCCAGAAAGAAAGTACCCTTCATTT 499131 Query 40896 AGTGTTGCGCTTGAGGGGCGG 40916 ||| | || |||||||| || Sbjct 499132 GGTGCTTCGTTTGAGGGGAGG 499152 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGT-GCAAACGCTCAAGGAAAA 40775 || ||||||||||| | || || ||| ||| |||| | | ||||| |||||| ||| Sbjct 499217 GGTAAAACCATCACATTGGAGGTAGAACCCAGTGACACTATCGAAAACG-TCAAGGCAAA 499275 Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835 || | ||||||||||| || ||| | ||||| || || | || | ||| || || || Sbjct 499276 GATCCAGGACAAAGAGGGTATTCCCCCAGACCAACAGCGTTTGATTTTCGCTGGAAAGCA 499335 Query 40836 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 ||| || |||| || || ||| ||||||||||| ||||| ||| ||| || ||| | Sbjct 499336 GCTTGAGGACGGTCGTACACTCTCTGACTACAACATTCAGAAAGAGAGCACCCTTCATTT 499395 Query 40896 AGTGTTGCGCTTGAGGGGCGG 40916 || | || |||||||| || Sbjct 499396 GGTACTTCGTTTGAGGGGAGG 499416 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAA 40776 || ||||||||||| | || || ||| ||| |||| | | | | |||||| ||| Sbjct 499481 GGTAAAACCATCACATTGGAGGTAGAACCCAGTGACACCATCGAGAATGTCAAGGCAAAG 499540 Query 40777 ATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAG 40836 || | ||||||||||| || ||| | || |||||||| || |||| |||||| || || Sbjct 499541 ATCCAGGACAAAGAGGGTATTCCCCCAGATCAGCAACGTCTTATCTTCGCGGGGAAGCAA 499600 Query 40837 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTA 40896 || || || | || || ||| ||||||||||| ||||| || || || || | Sbjct 499601 CTTGAAGATGGCCGTACACTCTCTGACTACAACATTCAGAAAGAAAGTACCCTTCACTTG 499660 Query 40897 GTGTTGCGCTTGAGGGGCGG 40916 || | ||||||||||| || Sbjct 499661 GTACTTCGCTTGAGGGGAGG 499680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217815348400