Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20sp._20Xinjiang_20[genbank_20GCA_5F002095265.1_202017-04- 18] 215 sequences; 8,447,544 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq37 163 7e-35 >seq37 Length=429747 Score = 163 bits (180), Expect = 7e-35 Identities = 923/1456 (63%), Gaps = 53/1456 (4%) Strand=Plus/Plus Query 363735 TTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGA 363794 |||||||||||| ||| || | || || | || || ||| | ||| | || | Sbjct 382570 TTACATTCGCGGTACAAACGGTAAAAGCAACGGTATTGTACCTATGTTGCGTATTTTCAA 382629 Query 363795 CAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTA 363854 |||||| || || || || || ||||| || || ||||| ||| ||||||| || || Sbjct 382630 TGCTACTGCAAGATATGTAGATCAAGGTGGTGGGAAACGCAAGGGGTCGTTTGCCATATA 382689 Query 363855 TCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTG-AGCTCCGGAAAAA-CACGGGA 363912 | || || || || ||||| | || ||||||| | || || ||||| ||||| | Sbjct 382690 CTTGGAACCATGGCACGCTGATATCATGGA-TTTCTTGGACCTACGTAAAAATCACGG-A 382747 Query 363913 AAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATG 363972 || ||| | || | ||| ||||||||||| | ||| | |||| | || ||| Sbjct 382748 GCTGAAGAAGCAAGGGCTAGAGATTTGTTCTATGCATTATGGATACCTGATCTGTTCATG 382807 Query 363973 AAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTT 364032 ||| | || |||||| | ||| |||| | |||||| | ||||| | |||||| Sbjct 382808 AAGAGAGTTGAGGCAAACGCTGACTGGACACTTATGTGCCCAGATGAATGCCGAGGTCTA 382867 Query 364033 TCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAG 364092 | ||||| ||||||||||| | | || || ||| ||| |||||| | | ||| Sbjct 382868 TATGATGTTTGGGGTGACGAATTCGAGGCACTTTACACAAAATATGAAGCAGCGGGGCTA 382927 Query 364093 GCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAG 364152 | ||||| || || || || |||| |||||||||||||| | | || || || Sbjct 382928 GGACGTAAAACCATACCAGCCCAGACTCTATGGTTTGCCATATTACAAAGCCAAATCGAA 382987 Query 364153 ACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCAC 364212 ||||| | || | ||| | ||||||||| | |||||| || || ||||| ||| | Sbjct 382988 ACAGGCAACCCATTCATGCTATACAAAGATGCCTGCAACGCTAAATCAAACCAACAGAAT 383047 Query 364213 CTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGAC 364272 ||||| || || | | ||||| ||| || ||| || | ||||| |||| || Sbjct 383048 CTTGGAACCATAAAATCGTCAAACCTGTGTTGTGAAATTGTTCAGTACACTTCTCCAGAG 383107 Query 364273 GAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA-----AGA-T 364326 || || || || || | || || || ||||| || || ||| || ||| Sbjct 383108 GAAGTGGCAGTCTGCAATTTGGCATCTATAGCGCTGCCTATGTATGTGAACAAGGAGACA 383167 Query 364327 GGTACTTTTGACCACCAGCATCTTTATGACGT--AACCTATCATGCTACTTGCAATCTCG 364384 | || | || | || | || ||||| || || | |||| || | ||| | Sbjct 383168 CGAACATACGATTTCAAGAAACTATATGATGTGGCACGTGTCAT--CACATTCAACTTAA 383225 Query 364385 ACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTC 364444 ||| | | || ||| |||||| ||||| |||| || ||| | || || || | Sbjct 383226 ACAGGATCATTGACCGGAATTACTATCCGGTTCCAGAGGCCAAAGTCTCCAACCAACGCC 383285 Query 364445 ATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGG 364504 || | || |||||| |||| ||||| || || |||||| ||| ||| | | | | Sbjct 383286 ATAGGCCAATTGGTGTTGGAGTACAAGGTCTGGCTGACACTTTCATGTTAATGAGGTACC 383345 Query 364505 CATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTG 364564 | || || ||| || || | |||| ||||| ||||| || || | || Sbjct 383346 CTTTCGAGTCGGAAGAAGCCAAGGAATTAAACCGTCGTATCTTCGAAACCATCTACTATG 383405 Query 364565 CCGCAATGACTGCTTCGTGT-GAT----TTGGC--AAAAACCAAGGGAAAGTACTCTACT 364617 ||| ||| | | || || ||||| | |||| | ||| ||| ||| Sbjct 383406 ----GATGTCTGGAT-GAGTCTATCTCATTGGCTGAGAAAC--ATGGACCCTACGAGACT 383458 Query 364618 TATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCA 364677 ||| | || || ||| |||| |||| ||| | |||||||| || ||| || ||| Sbjct 383459 TATCAAGGTTCGCCTGCTTCGAAGGGTAAACTACAGTTTGACCTCTGGGGTGCTACGGTG 383518 Query 364678 TCTGTC---CGATGGAACTGGGATACGCTACGTTCCAACGT--TAAG---AAGCATGGTA 364729 | | | ||| |||||| ||| | || | ||| | | || || || Sbjct 383519 GATAACAAACTGTGGGACTGGG--ACGAT---CTCAAGCGTCGCATGGCCAAACACGGCT 383573 Query 364730 CTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAA 364789 |||||||| || | || || ||||||||||| || || ||||||| || |||| Sbjct 383574 TGCGCAACTCACTATTCTTGGCCCCGATGCCCACGGCATCGACGTCACAGATTCTGGGAA 383633 Query 364790 ACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAG 364849 ||||||||| |||||||| | || |||||| | || | || || || ||| || | Sbjct 383634 ACAACGAGTCTTTCGAACCTTACACGAGCAATATCTACTATCGGCGTGTGCTTAGTGGCG 383693 Query 364850 AATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTG 364909 | ||| || || || || | | || ||| |||| || || |||| || Sbjct 383694 AGTTTTTCGTTGTGAACCCTCACTTGCTGCGCGACCTTGTGGACCTGGGACTCTGGGATG 383753 Query 364910 ACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTC 364969 | ||||||||| | | | || || ||||| || | | ||||| ||| | || Sbjct 383754 AGAGCATGAAGGAAAAACTTATTGCTTACAATGGATCCTTACGACACATT-GAGGGTATC 383812 Query 364970 ---CAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGA---ACTC 365023 ||| | ||| ||| | ||||||| || |||||||| || || | | || Sbjct 383813 CCTCAGCACATC--AAGGATCTTTACAAGACGGTATGGGAGAT---CAAACAAAAGACCA 383867 Query 365024 TCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTAT 365083 | || || ||||| || || || || | || || ||| || ||| | ||| | | Sbjct 383868 TTATCGACATGGCTGCTGACCGAGGAGTGTTCATTGACCAGTCGCAATCGCTAAACATTT 383927 Query 365084 TCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCG 365143 | || || || || | || || ||||| |||||| || ||||| ||||| | Sbjct 383928 ACCTGGAGCAACCTACGTTCGGTAAACTTACTAGCATGCACTTTTACGGATGGAAGAAGG 383987 Query 365144 GTCTTAAGACAGGTGC 365159 |||||||||| ||||| Sbjct 383988 GTCTTAAGACCGGTGC 384003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303350009668130