Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20sp._20Xinjiang_20[genbank_20GCA_5F002095265.1_202017-04- 18] 215 sequences; 8,447,544 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq207 116 4e-21 seq1 98.7 1e-15 >seq207 Length=758373 Score = 116 bits (128), Expect = 4e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGT-GCAAACGCTTAAAGAAAA 38329 || ||||| |||||| | || || ||| ||| |||| | | ||||| | || | ||| Sbjct 498953 GGTAAAACTATCACCTTAGAGGTGGAGCCCAGTGACACTATCGAAAACG-TCAAGGCAAA 499011 Query 38330 AATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACA 38389 |||| ||||||||||| |||||| | || || || || | |||| ||| || ||||| Sbjct 499012 GATCCAGGACAAAGAGGGTATTCCCCCAGATCAGCAACGTTTGATTTTCGCCGGTAAACA 499071 Query 38390 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTT 38449 ||| || || | || || ||| |||||||||||||| || ||| || || ||||| Sbjct 499072 GCTCGAGGATGGCCGTACACTCTCTGACTACAACATCCAGAAAGAAAGTACCCTTCATTT 499131 Query 38450 GGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||||| || || Sbjct 499132 GGTGCTTCGTTTGAGGGGAGG 499152 Score = 116 bits (128), Expect = 4e-21 Identities = 150/202 (74%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGT-GCAAACGCTTAAAGAAAA 38329 || ||||||||||| | || || || ||| |||| | | ||||| | || | ||| Sbjct 499217 GGTAAAACCATCACATTGGAGGTAGAACCCAGTGACACTATCGAAAACG-TCAAGGCAAA 499275 Query 38330 AATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACA 38389 |||| ||||||||||| |||||| | ||||||||||| | |||| ||| || || || Sbjct 499276 GATCCAGGACAAAGAGGGTATTCCCCCAGACCAACAGCGTTTGATTTTCGCTGGAAAGCA 499335 Query 38390 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA-AAAGGAAGCGACGCTGCATT 38448 ||| || |||| || || ||| ||||||||||| || |||| ||| || || |||| Sbjct 499336 GCTTGAGGACGGTCGTACACTCTCTGACTACAACATTCAGAAAGAGAGC-ACCCTTCATT 499394 Query 38449 TGGTGCTGCGTTTGAGAGGCGG 38470 |||| || |||||||| || || Sbjct 499395 TGGTACTTCGTTTGAGGGGAGG 499416 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 132882 CTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTT 132941 |||| | || |||||| |||| ||| ||| | || || || || ||||| || ||||| Sbjct 378138 CTTGTAAATAAAGCAACCAAAATCGGCATGAAGTCCTTCATCTCTTGAAATCAGCTCGTT 378079 Query 132942 GCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACT 133001 |||||| || | ||| ||||| || || ||||| || ||||| || || || |||||| Sbjct 378078 GCTGAAGGTAAGGCCTGGCATAAGACCACGTTTCTTCAGCCAGAAAATAGCACAGAAACT 378019 Query 133002 GCCCGAAAAGAAGACGCCCTCGACGGCCGC 133031 |||||||| || | |||||| || || || Sbjct 378018 TCCCGAAAAAAATATGCCCTCAACAGCTGC 377989 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAA 38330 || ||||||||||| | || || || ||| |||| | | | | | || | ||| Sbjct 499481 GGTAAAACCATCACATTGGAGGTAGAACCCAGTGACACCATCGAGAATGTCAAGGCAAAG 499540 Query 38331 ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAG 38390 |||| ||||||||||| |||||| | || || || || || || | |||||| || || Sbjct 499541 ATCCAGGACAAAGAGGGTATTCCCCCAGATCAGCAACGTCTTATCTTCGCGGGGAAGCAA 499600 Query 38391 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTG 38450 || || || | || || ||| ||||||||||| || || ||| || || || ||| Sbjct 499601 CTTGAAGATGGCCGTACACTCTCTGACTACAACATTCAGAAAGAAAGTACCCTTCACTTG 499660 Query 38451 GTGCTGCGTTTGAGAGGCGG 38470 || || || ||||| || || Sbjct 499661 GTACTTCGCTTGAGGGGAGG 499680 >seq1 Length=768689 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | ||||| ||||||||||| | || || ||| ||| Sbjct 683861 ATGCAGATTTTCGTGAAGACCTTAACGGGTAAAACCATCACTTTGGAGGTGGAGCCCAGT 683920 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| |||| | || |||| ||||| ||||| || || | ||||| Sbjct 683921 GACACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCGGACCAG 683980 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| ||||| || || || || | || || | |||||||| Sbjct 683981 CAGCGTTTGATTTTCGCTGGCAAGCAACTTGAGGATGGTCGTACATTGTCTGACTACAAT 684040 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || ||| || || |||||||| || ||| |||| || || Sbjct 684041 ATTCAGAAAGAAAGTACTCTTCATTTGGTTCTTCGTCTGAGGGGTGG 684087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171455785600