Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20sp._20Xinjiang_20[genbank_20GCA_5F002095265.1_202017-04- 18] 215 sequences; 8,447,544 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq19 134 5e-26 >seq19 Length=272159 Score = 134 bits (148), Expect = 5e-26 Identities = 242/353 (69%), Gaps = 3/353 (1%) Strand=Plus/Plus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 || ||||||||||| || ||||| || | |||||||| |||| || |||| || | Sbjct 232328 CCAGAAGAAATTTCGTCAATGGTACTCATCAAAATGAAGGAAATTGCGGAACTGTACCTA 232387 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 || | |||| ||||| || || ||||| || || || |||||||| |||| | Sbjct 232388 GGAAAAACTGTTAAGGATGCCGTTATCACTGTACCAGCATACTTCAATGACTCACAGAGA 232447 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 || || || ||||||||||| ||||| || | |||||| | || || || || ||| Sbjct 232448 CAGGCTACCAAAGATGCAGGTACCATTGCAGGACTCAATGTTATGCGTATCATCAACGAA 232507 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaT 451483 || || || || ||| | || || || || | || ||| | | | |||||||| || Sbjct 232508 CCAACCGCCGCCGCTATTGCCTACGGTCTCGACAA---AAAGGGATCGGAAGAAAAGAAC 232564 Query 451484 ATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGAT 451543 | | | || ||| ||||||| || || ||| || | ||| | || || ||| Sbjct 232565 GTACTCATCTTCGATCTTGGTGGCGGTACCTTCGATGTATCAATTCTTACTATCGAGGAT 232624 Query 451544 GGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 || | || ||||||||||| || || || || || |||||||||||||| Sbjct 232625 GGTATCTTCGAAGTAAAGGCTACAGCGGGAGACACACACCTAGGAGGTGAAGA 232677 Score = 111 bits (122), Expect = 6e-19 Identities = 337/511 (66%), Gaps = 16/511 (3%) Strand=Plus/Plus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTT-- 452048 || || |||||||| ||||| || ||||| || || |||||||| || || | ||| Sbjct 233075 AACCCCGATGAAGCCGTTGCTTACGGTGCCGCCGTACAAGCAGCCATCCTTTCTGGTGAC 233134 Query 452049 CAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAG 452108 ||| | |||| ||| ||| || || | | ||||| |||| || || || || Sbjct 233135 CAG-TCTGGAAAGATTCA-AGAGCTTTTGCTTCTCGATGTTGCACCACTCTCACTCGGTC 233192 Query 452109 TTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAAC--TTCTATTCCTTG 452166 | ||||| || ||||| | ||||| | | || || ||||||| | | || ||| Sbjct 233193 TCGAAACTGCAGGTGGTGTCATGACCGTTCTTATCAA--GAGGAACACTACCATCCCTAC 233250 Query 452167 TAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGG----TGTAACTATTC 452222 || |||| |||| || | || ||| || ||| ||||||| ||| || | Sbjct 233251 CAAGAAGACACAAATCTTCACCAC--CAAC-GAAAAC-AACCAGGAAGGTGTGTTCATCC 233306 Query 452223 AAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTC 452282 ||||||| ||||| |||||||| |||||| || || || ||||||| | || | Sbjct 233307 AAGTGTTCGAAGGTGAACGTGCTATGACAAAGGACAACAACCTACTAGGAAAGTTCCACC 233366 Query 452283 TTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTG 452342 || || ||| | ||| || || || |||||||| ||| | |||| ||| | | Sbjct 233367 TTACAGGTATTGCACCTGCTCCTAGAGGTGTACCTCAAATCGAAGTCACCTTCGATATCG 233426 Query 452343 ATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAAA 452402 | || || ||||| ||||| || | ||| | || || || | |||| || ||| | Sbjct 233427 ACGCTAACGGTATCCTTAACGTCACAGCAATGGACAAGTCTACCGGAAGGTCGGAACATG 233486 Query 452403 TTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATG 452462 | || || || || || || || | | | ||||| ||| ||||| | | Sbjct 233487 TCACCATCACCAACGACAAGGGGCGCCTCAGCACTGCTGATATCGAACGTATGGTTGCCG 233546 Query 452463 AAGCAGAAAAATTCAAGGATGATGATGAACA 452493 |||||||||| |||||||| || |||||||| Sbjct 233547 AAGCAGAAAAGTTCAAGGAGGAAGATGAACA 233577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975712957513220