Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20sp._20Xinjiang_20[genbank_20GCA_5F002095265.1_202017-04- 18] 215 sequences; 8,447,544 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq19 291 6e-73 seq86 91.5 1e-12 >seq19 Length=272159 Score = 291 bits (322), Expect = 6e-73 Identities = 966/1479 (65%), Gaps = 44/1479 (3%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 || || || ||||| ||||| || || || | ||| || |||||||| |||||||| || Sbjct 233454 GCTGTGACGTTAAGGATACCGTTAGCGTCGATATCGAAGGTGACTTCGATTTGAGGTACA 233395 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 ||||| ||||||||| || ||| | | || |||| || || || || || Sbjct 233394 CCTCTAGGAGCAGGTGCAATACCTGTAAGGTGGAACTTTCCTAGTAGGTTGTTGTCCTTT 233335 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTT---GATTATCTGAA 517435 || | |||||||| ||||| | |||||| ||| ||| || | || | | Sbjct 233334 GTCATAGCACGTTCACCTTCGAACACTTGGATG--AAC-ACACCTTCCTGGTTGTTTTCG 233278 Query 517436 TAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495 | || || || | | | || || ||| || || ||||| || | |||| | | Sbjct 233277 TTGGTGGTGAAGATTTGTGTCTTCTTGGTAGGGATGGTAGTGTTCCTCTTGATAAGAACG 233218 Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | ||||||||| ||||| | ||| || || || || | ||||| | || | | Sbjct 233217 GTCATGACACCACCTGCAGTTTCGAGACCGAGTGAGAGTGGTGCAACATCGAGAAGCAAA 233158 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTG---ACCAACAAGAATAGCTGCTTGAATAGCAGCA 517612 | | ||||| | |||| ||| || |||| ||| || |||||||| | || ||| Sbjct 233157 AGCTCTTGAA-TCTTTC--CAGACTGGTCACCAGAAAGGATGGCTGCTTGTACGGCGGCA 233101 Query 517613 CCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAA 517672 || || ||||| |||||||| || || | | | ||| || || ||||| || Sbjct 233100 CCGTAAGCAACGGCTTCATCGGGGTTGATTGACCTGCTGGGTTCCTTTCCGTTGAAGAAC 233041 Query 517673 T--TTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATT 517729 | |||| ||| | || | ||| || ||||| | ||| ||||| || | ||||| | Sbjct 233040 TCCTTGATG--AGT-GACTGGATCTTGGGGATACGCGTTGAACCTCCTACAAGTACAACT 232984 Query 517730 TCATGCACCTGTGATTTATCCAGTT---TTGAATCCAATAAAACTTTTTCAACGGGTTCA 517786 || || | | || |||| | |||| || | | |||||||||| || Sbjct 232983 TCGTGTATTTTCCTCTTGTCCAATCCACTTGATTCTAGTG---CTTTTTCAACTGGAATG 232927 Query 517787 AGACCCGCTC-TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGAC 517845 || |||| | || || ||| | ||||||||| | || | | | ||| Sbjct 232926 AGTGT-GCTCCTGAATTTTTCACCACACATTTCTTCGAACCTGGCACGGCTGATAGTTGT 232868 Query 517846 ATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGA 517905 || || || || || ||| | | || |||| |||||| || | ||||| || || Sbjct 232867 GTTGTAGTCGATACCCTCGTAAAGTGAGTCAAGTTCAATAGTGGCCTGAGTTGAGCTGGA 232808 Query 517906 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCT--TTTGCTGAT 517963 ||| ||||||| || | |||||| |||||| || | || | ||| |||| || | Sbjct 232807 GAGTACACGTTTTGCCCTTTCACAGTGTGTCCTAAGACGGCGAAGGGCCCGTTTGTTGCT 232748 Query 517964 TG----ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAG 518019 | |||| || || | || ||| |||| || || || | |||||| Sbjct 232747 GGCGAGATTCTT-TCCATTGTTGATC--CTCATGAAGTCCCTTACGCAGTGTTCTACAAG 232691 Query 518020 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 518079 | || || || ||||||||||| | | || | ||| | ||||| |||||| ||| Sbjct 232690 TAGGTTGTCGAAGTCTTCACCTCCTAGGTGTGTGTCTCCCGCTGTAGCCTTTACTTCGAA 232631 Query 518080 AAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAAT 518139 | ||||| || | || | || | |||||| ||| || ||||| | ||| || || Sbjct 232630 GATACCATCCTCGATAGTAAGAATTGATACATCGAAGGTACCGCCACCAAGATCGAAGAT 232571 Query 518140 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 518199 ||||| ||| |||||| | ||||| || ||||| || |||| ||| || || || Sbjct 232570 GAGTACGTTCTTTTCTTCCGATCCCTTTTTGTCGAGACCGTAGGCAATAGCGGCGGCGGT 232511 Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 |||||| || || || | || |||||| || || ||||| | ||||||||||| || || Sbjct 232510 TGGTTCGTTGATGATACGCATAACATTGAGTCCTGCAATGGTACCTGCATCTTTGGTAGC 232451 Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTT 518319 ||||| ||||| || || || ||||| || ||||| ||||||||||| | || ||| Sbjct 232450 CTGTCTCTGTGAGTCATTGAAGTATGCTGGTACAGTGATAACGGCATCCTTAACAGTTTT 232391 Query 518320 ACCAATATA-AGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTT 518378 || | || || | || ||| |||||||| | | | |||||| ||||||| || Sbjct 232390 TCCTAGGTACAGTTC-CGCAATTTCCTTCATTTTGATGAGTACCATTGACGAAATTTCTT 232332 Query 518379 CTGG--GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACC 518436 |||| |||| | ||| || ||| | | |||||| | ||||| || Sbjct 232331 CTGGGTGGAAGCT--CTTCTTTTGTCCTTGGAAGGTTACTTCGATGGTAGGTTTGCCTCC 232274 Query 518437 AA---CATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATT 518493 || | || | || ||||||||||||| ||||||||| ||| || | | ||| | Sbjct 232273 AATACCGTTGACCACCTTAAATGGCCAGTGTTTCATATCATCTTGTACCGTGTTGTCGTC 232214 Query 518494 AAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGC 518553 ||| ||||||||| | || || ||||| |||| || || ||| || |||| | Sbjct 232213 AAACCTTCTACCAATAAGTCTCTTGGCATCGAAAACGGTGTTTTCTGGGTTCCTTGCTTC 232154 Query 518554 TTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGG 518613 ||| | ||||| ||||| ||||| ||| |||| || || || || | || || || || Sbjct 232153 TTGGTTCTTGGCGGCATCACCAATGAGACGTTCGGTGTCGGTGAAAGCGACGTAAGAGGG 232094 Query 518614 AGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACC 518673 || || | ||||| || ||||| | || || || || || | | ||||||| Sbjct 232093 TGTGGTTCTGTTACCCTGGTCATTAGGTATGATCTCGACATTGTTGTCCTTGTATACACC 232034 Query 518674 TACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 |||||| | || || || || || ||||| ||||| Sbjct 232033 TACACATGAGTAGGTGGTACCCAAGTCGATACCGATAGC 231995 Score = 86.0 bits (94), Expect = 5e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 322243 ACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGC 322302 |||||| |||| ||| || || |||||||| || || || | ||||| | || || Sbjct 232534 ACCGTAGGCAATAGCGGCGGCGGTTGGTTCGTTGATGATACGCATAACATTGAGTCCTGC 232475 Query 322303 AATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGT 322362 ||| || | | ||| || || |||||||||| |||||| || |||||||||||||| Sbjct 232474 AATGGTACCTGCATCTTTGGTAGCCTGTCTCTGTGAGTCATTGAAGTATGCTGGTACAGT 232415 Query 322363 AATAACTGCTTTATTAATAGGTTTT 322387 ||||| || | |||| || |||| Sbjct 232414 GATAACGGCATCCTTAACAGTTTTT 232390 >seq86 Length=883075 Score = 91.5 bits (100), Expect = 1e-12 Identities = 236/353 (67%), Gaps = 5/353 (1%) Strand=Plus/Plus Query 635406 ATGCTCACAAGGCAGGAACCAAAGAAGGATATAAATGTACCCTAATTTTGACAGAGGGAG 635465 ||||| |||||||||| || | | | ||||||| || || ||||||||||||| Sbjct 115526 ATGCTAACAAGGCAGGTACTCGTCATGCCCGTGAATGTACTCTCATATTGACAGAGGGAG 115585 Query 635466 ATTCAGCTAAAACATTCGCTATGTCTGGTCTTAATGTTATTGGAAGAGATTATTATGGAG 635525 | || || || || | | | ||||||| ||| |||| |||| ||||||| | Sbjct 115586 ACTCTGCCAAGACCTCATGTTTAGCTGGTCTCTCAGTTGTTGGTCGAGACAATTATGGTG 115645 Query 635526 TTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCTaaaaaaaTTGCTG 635585 | || ||||| | || ||||| | || ||||| ||||||||| ||| | | | | Sbjct 115646 TGTTTCCACTAAAGGGTAAACTGCTTAACGTTAGAGATGCTAGTTATAAGCAGCTGGTTC 115705 Query 635586 ATAATGAGGAAATTACAGCA-ATCaaaaaaaTTGTTGGACTTGA-ACA-AGGAAAAGTTT 635642 | |||| ||||| ||||| | ||| ||||| | ||||| || | | ||||| | Sbjct 115706 AAAATGCGGAAA-TACAGAATATCCTGAAAATCATGGGACTAGATATATCTAAAAAGGAT 115764 Query 635643 ATGATGATCTC-AAAGGTTTACGATATGGTAGTATTATGATTCTTGCTGATCAAGATGTT 635701 ||||| | | | ||| | |||| ||| || ||||| | | ||||| ||| | Sbjct 115765 CAGATGACCCCTGATGGTCTTAGATACGGTTCAATAATGATAATGACCGATCAGGATTAT 115824 Query 635702 GATGGGTACCATATCAAAGGATTAATCATGAATTTTATCCATTGTTTTTGGCC 635754 || || | |||||||| || || | || || | | |||| ||||||||| Sbjct 115825 GACGGCTCACATATCAAGGGTTTGCTTATTAACCTATTACATTATTTTTGGCC 115877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780811730991790