Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20sp._20Xinjiang_20[genbank_20GCA_5F002095265.1_202017-04- 18] 215 sequences; 8,447,544 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq37 125 9e-24 seq180 87.8 2e-12 >seq37 Length=429747 Score = 125 bits (138), Expect = 9e-24 Identities = 359/539 (67%), Gaps = 15/539 (3%) Strand=Plus/Plus Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGT 111764 |||| || || || ||||| |||||| | | || ||||||||||| |||||||| ||| Sbjct 382382 TTCACTCATGCGACGCCAACACTCTTCTTCTCAGGGACACCAAGACCACAAATGTCAAGT 382441 Query 111765 TGTTTCCTTATTGCAAAC-AAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGA 111823 || ||| ||| || | | || || || || | ||| || | | || | || | Sbjct 382442 TGCTTC-TTACTGGATATGAAAGATGACTCCCTGGCTGGAATATTTGATACCTTGACACA 382500 Query 111824 ATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACAT-CCATGATGTCAGAG 111882 ||| || ||| || || ||||| ||||| || || ||| ||| | |||| | Sbjct 382501 ATGCGCATTCATCAGCAAATGTGCTGGAGGTATAGGTTTGG-CATGCCACAAAATCAGGG 382559 Query 111883 CCAACAAGT-CTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTT 111941 | || || || ||| | |||||||| ||| || | |||||| | || ||| | Sbjct 382560 C-AAGTGGTGCTTACATTCGCGGTACAAACGGTAAAAGCAACGGTATTGTACCTATGTT- 382617 Query 111942 CGCGTATTT--AACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGAT 111996 |||||||| || || || || | |||||| | |||| ||| | |||||||| | Sbjct 382618 -GCGTATTTTCAATGCTACTGCAAGATATGTAGATCAAGGTGGTGGGAAACGCAAGGGGT 382676 Query 111997 CTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTC 112056 | | || | || | || ||||||||||| ||||||||||| ||| | || | ||| Sbjct 382677 CGTTTGCCATATACTTGGAACCATGGCACGCTGATATCATGGATTTCTTGGACCTACGTA 382736 Query 112057 TCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAG 112116 || || || | ||| || || || | ||| | |||| || | ||||| || | Sbjct 382737 AAAATCACGGAGCTGAAGAAGCAAGGGCTAGAGATTTGTTCTATGCATTATGGATACCTG 382796 Query 112117 ATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA-CAAG 112175 |||| ||||||||||||||||||| | | | ||| | || | || ||||| || Sbjct 382797 ATCTGTTCATGAAGAGAGTTGAGGCAAACGCTGACTGGACACTTATGTGCCCAGATGAAT 382856 Query 112176 GCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGA 112234 || | ||||| | |||| |||||| || || || || || |||||||| || || Sbjct 382857 GC-CGAGGTCTATATGATGTTTGGGGTGACGAATTCGAGGCACTTTACACAAAATATGA 382914 >seq180 Length=439454 Score = 87.8 bits (96), Expect = 2e-12 Identities = 201/297 (68%), Gaps = 12/297 (4%) Strand=Plus/Minus Query 16058 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT----TGATTTTCGCGAGCGA 16113 |||||| || |||| ||||| ||||| |||||||||||| | || | || |||| Sbjct 104913 TCCCACTGCGTCAAGTTCATCTATGAATACGATGCATGGTGACATTGTTCTGGCCAGCG- 104855 Query 16114 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 16173 | || || || |||| | | | || || |||||||| ||||| ||| |||| | | Sbjct 104854 ---CGAAAAGCTCACGTATCCTCCTAGCACCTACACCAACGAACATTTCCTCAAATTCCG 104798 Query 16174 CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233 | ||| ||| || || |||||| | ||| ||||||| |||| || | || | Sbjct 104797 AACCTGAAGCTTGTATAAATGGGACACCCGCTTCCCCCGCAACCGCTCTAGCCAACAGGG 104738 Query 16234 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGG-AATCTTGGCGCCACTT 16292 |||| ||||| ||||| ||||| || || | || ||| |||| | || ||| | Sbjct 104737 TCTTGCCCGTCCCTGGTGGTCCCGCCAGTAGCACTCCCTTTGGCAATCGT-GCTCCAAGT 104679 Query 16293 CCAAAGTATCTCTCAGG-TTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTT 16348 | | || |||| || |||| ||| || ||||||| || || ||||| | ||| Sbjct 104678 TTATCGAATTTCTCTGGATTGC-GCAGATAAGCCACAATATCATCTAATTCCTTTTT 104623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620740731754800