Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20sp._20Xinjiang_20[genbank_20GCA_5F002095265.1_202017-04- 18] 215 sequences; 8,447,544 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq37 163 3e-35 >seq37 Length=429747 Score = 163 bits (180), Expect = 3e-35 Identities = 472/711 (66%), Gaps = 24/711 (3%) Strand=Plus/Minus Query 48104 TTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACA 48163 ||| ||||| || || | ||| ||||| || || | |||| || || || | || Sbjct 382915 TTCATATTTTGTGTAAAGTGCCTCGAATTCGTCACCCCAAACATCATATAGACCTCGGCA 382856 Query 48164 TTCATTAGGACACATCAATGACCAATCCTCATCATTT---TTTACTCTAGTCATAAATAT 48220 ||||| || ||||| | || ||| || | | ||| | ||||| |||| || | Sbjct 382855 TTCATCTGGGCACATAAGTGTCCAGTC---AGCGTTTGCCTCAACTCTCTTCATGAACAG 382799 Query 48221 ATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTAT 48279 ||| |||||||| | || ||| || ||||| |||| ||| ||||||| || || Sbjct 382798 ATCAGGTATCCATAATGC-ATAGAACAAATCTCTAGCCCTTGCTTCTTCAGCTCCGTGAT 382740 Query 48280 TCCTTT---TAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTG 48336 | ||| || || ||||||| ||||| |||||||| ||||||||||| || ||||| | Sbjct 382739 T--TTTACGTAGGTCCAAGAAA-TCCATGATATCAGCGTGCCATGGTTCCAAGTATATGG 382683 Query 48337 C-CATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 | | || ||| | ||||| ||| |||||||||| |||||| |||||| || || Sbjct 382682 CAAACGACCCCTTG-CGTTTCCCACCACCTTGATCTACATATCTTGCAGTAGCATTGAAA 382624 Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455 | | ||||| || |||||||| || | |||| || || || ||| ||| ||| Sbjct 382623 ATACGCAACATAGGTACAATACCGTTGCTTTTACCGTTTGTACCGCGAATGTAAGCACCA 382564 Query 48456 CTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGC-CATTTTAGAT-ATTAGAG 48513 || || || || || || | ||||||||| || || ||||| | | || | | Sbjct 382563 CTTGCCCTGATTTTGTGGCATGCCAAACCTATACCTCCAGCACATTT--GCTGATGAATG 382506 Query 48514 CACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAA 48573 | || || | | ||||||| | ||||| | | |||||| |||||| | || | Sbjct 382505 CGCATTGTGTCAAGGTATCAAATATTCCAGCCAGGGAGTCATCTTTCATATCCAGTAAGA 382446 Query 48574 AACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAA 48633 | ||||| |||||||| || || ||||| || | |||||| | |||||| Sbjct 382445 AGCAACTTGACATTTGTGGTCTTGGTGTCCCTGAGAAGAAGAGTGTTGGCGTCGCATGAG 382386 Query 48634 TAAACCATTTCT--CTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTG 48691 | || |||| | || || | | ||| || | || || || || | Sbjct 382385 TGAAATATTTTTGACTCAT--GAGGTGATAAGTCTGTATTGTTCGTTCAATGTCACCACA 382328 Query 48692 ATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATT 48751 |||||| ||| || || ||||||||||| | ||| ||||||||| || ||| | || Sbjct 382327 ATGTATCCCTGCTGACACCCGCATTAACATGTGTTGTGGTCTTTCAGAAACTTTATCGTT 382268 Query 48752 TATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 || | ||| ||||| | ||||||||||| | ||||||||| | ||| Sbjct 382267 AATGCGTAGAAGGTATGACCTCTCCAATGTTTTCAGACCAAAATAATCGTA 382217 Score = 82.4 bits (90), Expect = 9e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 46977 TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTC 47036 ||||| |||||||| || | || | | || | || || || |||||||| ||| ||| Sbjct 384054 TCCACTGTAAACTTGATGGCATCAGTTGCCGGTTGCGTACGCAAATAATAAGCACCGGTC 383995 Query 47037 TTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCT 47096 || | ||| ||||||| || || ||||| ||||| | |||| | |||||| Sbjct 383994 TTAAGACCCTTCTTCCATCCGTAAAAGTGCATGCTAGTAAGTTTACCGAACGTAGGTTGC 383935 Query 47097 GAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATA 47156 | | ||| || || ||||| ||| ||||| || | |||| ||||| ||||| Sbjct 383934 TCCAGGTAAATGTTTAGCGATTGCGACTGGTCAATGAACACTCCTCGGTCAGCAGCCATG 383875 Query 47157 TCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAA 47199 || | ||| | ||||| ||||||||||| || || |||| Sbjct 383874 TCGATAATGGTCTTTTGTTTGATCTCCCATACCGTCTTGTAAA 383832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107289332600