Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20sp._20Xinjiang_20[genbank_20GCA_5F002095265.1_202017-04- 18] 215 sequences; 8,447,544 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq19 187 2e-41 seq86 104 2e-16 seq1 104 2e-16 seq207 95.1 1e-13 >seq19 Length=272159 Score = 187 bits (206), Expect = 2e-41 Identities = 405/598 (68%), Gaps = 11/598 (2%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||||| ||||| || || || ||||| || ||||| ||||| | | | || Sbjct 231994 AGCTATCGGTATCGACTTGGGTACCACCTACTCATGTGTAGGTGTATACAAGGACAACAA 232053 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || || || || | ||||| || ||||||||||| || || ||||| || ||||||| Sbjct 232054 TGTCGAGATCATACCTAATGACCAGGGTAACAGAACCACACCCTCTTACGTCGCTTTCAC 232113 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || || |||| | | |||||||||| || || | |||| | | || || || Sbjct 232114 CGACACCGAACGTCTCATTGGTGATGCCGCCAAGAACCAAGAAGCAAGGAACCCAGAAAA 232173 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 || |||| ||||| || | | ||||| ||||| ||| | || || || || | Sbjct 232174 CACCGTTTTCGATGCCAAGAGACTTATTGGTAGAAGGTTTGACGACAACACGGTACAAGA 232233 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGA 550287 |||||||| || ||||| || | | || || | | |||| |||||| || || Sbjct 232234 TGATATGAAACACTGGCCATTTAAGGTGGTCAACGGTATTGGAGGCAAACCTACCATCGA 232293 Query 550288 AGCTACTCATGAAGGATCTGTTAAACAATTTTCACC-AGAACAAATTTCATCTATGGTTT 550346 || || ||||| | || | || |||| |||| ||||||| || ||||| Sbjct 232294 AGTAACCTTCCAAGGA-CAAAAGAAGAGCTTCCACCCAGAAGAAATTTCGTCAATGGTAC 232352 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAGTA 550405 | || |||||||| ||| || | || | | | || | |||| |||||| || Sbjct 232353 TCATCAAAATGAAGGAAATTGCG-GAACTGTACCTAGGAAAAACTGTTAAGGATGCCGTT 232411 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 || |||||||||||||| || ||||||||||| | || ||||| |||||||| || Sbjct 232412 ATCACTGTACCAGCATACTTCAATGACTCACAGAGACAGGCTACCAAAGATGCAGGTACC 232471 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 ||||| ||||| |||||| | ||||| ||||| ||||| || || || || |||| || Sbjct 232472 ATTGCAGGACTCAATGTTATGCGTATCATCAACGAACCAACCGCCGCCGCTATTGCCTAC 232531 Query 550526 GGACTTGATAAACATAATGATC--AAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 || || || || | | |||| ||||| || ||||||||||| ||| ||| || Sbjct 232532 GGTCTCGACAA--AAAGGGATCGGAAGAAAAGAACGTACTCATCTTCGATCTTGGTGG 232587 >seq86 Length=883075 Score = 104 bits (114), Expect = 2e-16 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 || ||||||||||||||||| ||||| | ||||||||| ||||||| || ||||| Sbjct 446078 ATCACTGTACCAGCATATTTCAATGATGCTCAACGTCAATCTACTAAGGACGCTGGTGCC 446019 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 || ||||||||| | ||| | ||||| ||||| ||||| || || ||||| |||| || Sbjct 446018 ATCGCTGGACTTGAGGTTGTACGTATCATCAACGAACCCACCGCCGCTGCCATTGCCTAC 445959 Query 550526 GG 550527 || Sbjct 445958 GG 445957 >seq1 Length=768689 Score = 104 bits (114), Expect = 2e-16 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || |||||||||||||| |||||||| ||||| |||||||| || ||||| Sbjct 617813 GCTGTTATTACAGTACCAGCATATTTCAATGACTCCCAACGCCAAGCTACCAAGGATGCC 617872 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || |||||||||||| |||| | | || ||||| |||||||| || ||||| | Sbjct 617873 GGTAAAATTGCTGGACTTGATGTATTGAGGATCATCAACGAACCTACCGCAGCTGCTTTG 617932 Query 550520 GCATATGGACTTGATAAACATAATG 550544 || | || ||||| || || ||| Sbjct 617933 GCGTTCGGTCTTGAAAAGAATGATG 617957 Score = 93.3 bits (102), Expect = 3e-13 Identities = 157/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| ||||| || || | |||||| ||||||||||| ||||||||| |||| | || Sbjct 684082 CCTCAGACGAAGAACCAAATGAAGAGTACTTTCTTTCTGAATATTGTAGTCAGACAATGT 684023 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | ||| |||||||| || || || ||||| | | ||||| || ||||| || || Sbjct 684022 ACGACCATCCTCAAGTTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCCGGAGGGATACC 683963 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGA 563431 || || ||||| || || || || ||||| || ||| || | | || || | Sbjct 683962 CTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTGTCACTG-GGCTCCACCTCCA 683904 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATAG 563476 ||| | |||||||| || | || || |||||||| ||||||| Sbjct 683903 AAGTGATGGTTTTACCCGTTAAGGTCTTCACGAAAATCTGCATAG 683859 >seq207 Length=758373 Score = 95.1 bits (104), Expect = 1e-13 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 563260 CGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAA 563319 || ||||| | ||||||||||||||||| ||| ||||| |||| || || | | Sbjct 499668 CGAAGTACCAAGTGAAGGGTACTTTCTTTCTGAATGTTGTAGTCAGAGAGTGTACGGCCA 499609 Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 ||||||||||| || || || || ||||| | ||||||||| || ||||| || ||||| Sbjct 499608 TCTTCAAGTTGCTTCCCCGCGAAGATAAGACGTTGCTGATCTGGGGGAATACCCTCTTTG 499549 Query 563380 TCTTGAATTTTT 563391 || || || ||| Sbjct 499548 TCCTGGATCTTT 499537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029284629830350