Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20sp._20Xinjiang_20[genbank_20GCA_5F002095265.1_202017-04- 18] 215 sequences; 8,447,544 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1 113 3e-19 seq207 104 2e-16 seq86 87.8 1e-11 >seq1 Length=768689 Score = 113 bits (124), Expect = 3e-19 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || || | |||||| ||||||||||| || ||| || |||| | || | Sbjct 684078 AGACGAAGAACCAAATGAAGAGTACTTTCTTTCTGAATATTGTAGTCAGACAATGTACGA 684019 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| ||||||||||| ||||| ||||| | ||| || || || ||||| || || ||| Sbjct 684018 CCATCCTCAAGTTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCCGGAGGGATACCCTCC 683959 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAAGGGT 480733 |||||||| ||||| || ||| |||||| || ||| || | | | | ||| || Sbjct 683958 TTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTGTCACTGGGCTCCACCTCCAA-AGT 683900 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || |||||||| || | ||||| |||||||| || Sbjct 683899 GATGGTTTTACCCGTTAAGGTCTTCACGAAAATCTG 683864 Score = 107 bits (118), Expect = 1e-17 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 474711 CATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATT 474770 || |||| ||| | | ||||| | || || ||||| || ||||||||||| ||||| | Sbjct 617787 CACATCTCGGAAGAAAGGTAACCAAAGCTGTTATTACAGTACCAGCATATTTCAATGACT 617846 Query 474771 CTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTA 474830 | ||||| ||||| || || ||||| || | |||||| || ||| |||| || | || | Sbjct 617847 CCCAACGCCAAGCTACCAAGGATGCCGGTAAAATTGCTGGACTTGATGTATTGAGGATCA 617906 Query 474831 TTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAAT 474877 | || ||||| || ||||| || | || | |||||||| |||||| Sbjct 617907 TCAACGAACCTACCGCAGCTGCTTTGGCGTTCGGTCTTGAAAAGAAT 617953 Score = 98.7 bits (108), Expect = 6e-15 Identities = 115/153 (75%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 290820 TTCCAAGACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAA 290879 || ||||||| | | || | |||||| || ||||| || || || || |||||||||| Sbjct 617948 TTTCAAGACCGAACGCCAAAGCAGCTGCGGTAGGTTCGTTGATGATCCTCAATACATCAA 617889 Query 290880 GACCTGCAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAG 290939 | || |||||||| | | ||| || || |||||||| | ||||| ||||| || | Sbjct 617888 GTCCAGCAATTTTACCGGCATCCTTGGTAGCTTGGCGTTGGGAGTCATTGAAATATGCTG 617829 Query 290940 GGACTGTAATAACAGCTTT--TTCCACTTTCTT 290970 | ||||||||||||||||| || | ||||||| Sbjct 617828 GTACTGTAATAACAGCTTTGGTTAC-CTTTCTT 617797 >seq207 Length=758373 Score = 104 bits (114), Expect = 2e-16 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 480558 CGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTA 480617 || ||||| | ||||| ||||||||||| || || || |||| || || | | | Sbjct 499668 CGAAGTACCAAGTGAAGGGTACTTTCTTTCTGAATGTTGTAGTCAGAGAGTGTACGGCCA 499609 Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 |||||||||||||| || || || ||||||||||| ||||| || ||||| || || ||| Sbjct 499608 TCTTCAAGTTGCTTCCCCGCGAAGATAAGACGTTGCTGATCTGGGGGAATACCCTCTTTG 499549 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGT 480719 || || |||||| |||||| || || || ||| || || Sbjct 499548 TCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGT 499507 Score = 87.8 bits (96), Expect = 1e-11 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 480557 ACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTT 480616 ||| ||||| | |||||| || || ||||| || || || |||| || || | Sbjct 499405 ACGAAGTACCAAATGAAGGGTGCTCTCTTTCTGAATGTTGTAGTCAGAGAGTGTACGACC 499346 Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 || ||||| ||||||||||| ||||| | ||| ||||| || || ||||| || || || Sbjct 499345 GTCCTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATACCCTCTTT 499286 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGT 480719 ||| || |||||| ||||| ||| ||||| ||| || || Sbjct 499285 GTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTCACTGGGT 499243 >seq86 Length=883075 Score = 87.8 bits (96), Expect = 1e-11 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 || ||||| ||||||||||| |||||| ||||||||||| | ||||| || || || Sbjct 446078 ATCACTGTACCAGCATATTTCAATGATGCTCAACGTCAATCTACTAAGGACGCTGGTGCC 446019 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 || || || ||| | ||| ||||||| || || ||||| || || || || |||| || Sbjct 446018 ATCGCTGGACTTGAGGTTGTACGTATCATCAACGAACCCACCGCCGCTGCCATTGCCTAC 445959 Query 474863 GGT 474865 ||| Sbjct 445958 GGT 445956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268169977606820