Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20sp._20Xinjiang_20[genbank_20GCA_5F002095265.1_202017-04- 18] 215 sequences; 8,447,544 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq19 518 4e-142 seq37 154 2e-32 seq207 129 8e-25 seq12 102 1e-16 seq1 93.3 6e-14 >seq19 Length=272159 Score = 518 bits (574), Expect = 4e-142 Identities = 1099/1615 (68%), Gaps = 44/1615 (3%) Strand=Plus/Plus Query 195286 CATAATGTCT---CAAGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGT 195342 || ||||||| | |||||| |||||||| || || || || ||||||||||| ||||| Sbjct 231979 CAAAATGTCTGCACCAGCTATCGGTATCGACTTGGGTACCACCTACTCATGTGTAGGTGT 232038 Query 195343 ATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATC 195402 || | | | ||| ||||| || || |||||||| || ||| | || || || || Sbjct 232039 ATACAAGGACAACAATGTCGAGATCATACCTAATGACCAGGGTAACAGAACCACACCCTC 232098 Query 195403 GTACGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGC 195462 ||||| || || || || | ||||||||| |||| |||||||| || || || ||| Sbjct 232099 TTACGTCGCTTTCACCGACACCGAACGTCTCATTGGTGATGCCGCCAAGAACCAAGAAGC 232158 Query 195463 TATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGA 195522 | |||||| || || || || || || ||| | ||||||||| | | |||| || Sbjct 232159 AAGGAACCCAGAAAACACCGTTTTCGATGCCAAGAGACTTATTGGTAGAAGGTTTGACGA 232218 Query 195523 TAAGAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGA 195582 || | || ||||| ||||| || ||||| | | | | || || |||| | | | Sbjct 232219 CAACACGGTACAAGATGATATGAAACACTGGCCATTTAAGGTGGTCAACGGTATTGGAGG 232278 Query 195583 TAAGCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAA 195641 || |||| || | || || || || | ||||| | || | ||| ||||||| Sbjct 232279 CAAACCTACCATCGAAGTAACCTTCCAAGGACAAAAGAAG-AGCTTCCACCCAGAAGAAA 232337 Query 195642 TTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTG 195701 ||||||| ||||| | || || |||||||| | ||||||| | | | || ||||||| Sbjct 232338 TTTCGTCAATGGTACTCATCAAAATGAAGGAAATTGCGGAACTGTACCTAGGAAAAACTG 232397 Query 195702 TGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAA 195761 | || ||||| ||| | |||||||| || ||||||| ||| ||||| ||||||| || | Sbjct 232398 TTAAGGATGCCGTTATCACTGTACCAGCATACTTCAATGACTCACAGAGACAGGCTACCA 232457 Query 195762 AGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGG 195821 | || || | | | ||||| || || || | | | || ||||| |||||||| || | Sbjct 232458 AAGATGCAGGTACCATTGCAGGACTCAATGTTATGCGTATCATCAACGAACCAACCGCCG 232517 Query 195822 CTGCAATTGCTTATGGTCTGGACAAGAACAAGGA--CGAAGATAAAAATGTATTGATCTT 195879 | || ||||| || ||||| |||| || | ||| ||||| || || ||| | ||||| Sbjct 232518 CCGCTATTGCCTACGGTCTCGACA--AAAAGGGATCGGAAGAAAAGAACGTACTCATCTT 232575 Query 195880 TGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGA 195939 ||||| ||||| ||||| || ||||| ||| |||| | ||| || | |||||| ||||| Sbjct 232576 CGATCTTGGTGGCGGTACCTTCGATGTATCAATTCTTACTATCGAGGATGGTATCTTCGA 232635 Query 195940 AGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCT 195999 |||||||||||| || || || || || ||||| |||||||| ||||| | ||| | Sbjct 232636 AGTAAAGGCTACAGCGGGAGACACACACCTAGGAGGTGAAGACTTCGACAACCTACTTGT 232695 Query 196000 CCGTCA-TTTGTCTGATGAGTTCCGTCGAAAGAATAA--GAAAG-ATATTTCTGGAAATC 196055 || | || | || ||| | | || || ||||| || | | | || Sbjct 232696 AGAACACTGCGTAAG-GGACTTCATGAGGATCAACAATGGAAAGAATCTCGCCAGCAACA 232754 Query 196056 CTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAAC--GAACTCTCTCTTC 196113 |||| ||||| || |||||||| |||||| | || |||| | |||||| | | Sbjct 232755 AACGGGCCCTTCGCCGTCTTAGGACACACTGTGAAAGGGCAAAACGTGTACTCTC-CAGC 232813 Query 196114 TACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAAC 196173 | | |||| | | |||| |||| || | | || || || |||| | | ||||| Sbjct 232814 T-CAACTCAGGCCACTATTGAACTTGACTCACTTTACGAGGGTATCGACTACAACACAAC 232872 Query 196174 TATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACC 196233 ||| | |||||| | || ||||| | ||| || |||| | || Sbjct 232873 TATCAGCCGTGCCAGGTTCGAAGAAATGTGTGGTGAAAAATTCAGGAGCACACTCATTCC 232932 Query 196234 TGTTGAACAAGTACTTCGTGACGCAA--AGA-TGGATAAGTCTAAGGTTGATGAAATTGT 196290 |||||| ||| ||| || ||| || |||| ||| || | | ||| |||| Sbjct 232933 AGTTGAAAAAGCACT---AGAATCAAGTGGATTGGACAAGAGGAAAATACACGAAGTTGT 232989 Query 196291 CCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCT-TTCTAG--CTTCTT 196347 ||||| ||||| ||||| ||||| || ||||| ||| || || || ||||| Sbjct 232990 ACTTGTAGGAGGTTCAACGCGTATCCCCAAGAT---CCAGTCACTCATCAAGGAGTTCTT 233046 Query 196348 CAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGC 196407 ||| || || | || | |||||||| |||||||| |||||||| ||||| || Sbjct 233047 CAACGGAAAGGAACCCAGCAGGTCAATCAACCCCGATGAAGCCGTTGCTTACGGTGCCGC 233106 Query 196408 CGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACT 196467 ||| || || || || || || |||| | | || | ||||| ||| |||| || Sbjct 233107 CGTACAAGCAGCCATCCTTTCTGGTGACCAGTCTGGAAAGATTCAAGAGCTTTTGCTTCT 233166 Query 196468 TGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTAT 196527 ||||||||||| | || || ||||| ||||| || |||||||| ||||| |||| Sbjct 233167 CGATGTTGCACCACTCTCACTCGGTCTCGAAACTGCAGGTGGTGTCATGACCGTTCTTAT 233226 Query 196528 TGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAA 196587 | |||||||| || || || || |||||| |||| |||| | || | ||| || Sbjct 233227 CAAGAGGAACACTACCATCCCTACCAAGAAGACACAAATCTTCACCACCAA---CGA-AA 233282 Query 196588 TCAACCAG------GTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGG 196640 ||||||| |||||| || ||||| | ||||| ||||| | | || |||||| Sbjct 233283 ACAACCAGGAAGGTGTGTTC--ATCCAAGTGTTCGAAGGTGAACG-TGCTATGACAAAGG 233339 Query 196641 ATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTC 196700 | ||| | ||||| |||| ||| | | || || ||| || |||| || |||||||| | Sbjct 233340 ACAACAACCTACTAGGAAAGTTCCACCTTACAGGTATTGCACCTGCTCCTAGAGGTGTAC 233399 Query 196701 CACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGG 196760 | || || | || ||||||||| ||||| || || || || ||||||||||| || Sbjct 233400 CTCAAATCGAAGTCACCTTCGATATCGACGCTAACGGTATCCTTAACGTCACAGCAATGG 233459 Query 196761 ACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTA 196820 ||||| || | || | || ||| | | || ||||| ||||||||||| || | Sbjct 233460 ACAAGTCTACCGGAAGGTCGGAACATGTCACCATCACCAACGACAAGGGGCGCCTCAGCA 233519 Query 196821 AGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 | || || |||||||||||| || || ||||||| || ||| ||||| || Sbjct 233520 CTGCTGATATCGAACGTATGGTTGCCGAAGCAGAAAAGTTCAAGGAGGAAGATGA 233574 >seq37 Length=429747 Score = 154 bits (170), Expect = 2e-32 Identities = 337/499 (68%), Gaps = 7/499 (1%) Strand=Plus/Plus Query 78263 GGAATTATTCCTATGCTTAGGGTATTCAATGCTACAGCACGCTATGTCAACCAAGCGGGT 78322 || ||| | |||||| | | | ||||||||||| ||| | ||||| | |||| ||| Sbjct 382601 GGTATTGTACCTATGTTGCGTATTTTCAATGCTACTGCAAGATATGTAGATCAAGGTGGT 382660 Query 78323 CGTA---GGAAGGGGTCATTCGCTATGTACCTTGAACCTTGGCACGCCGATGTAATGGAT 78379 | | | |||||||| || || || ||| | ||||| |||||||| ||| | |||||| Sbjct 382661 GGGAAACGCAAGGGGTCGTTTGCCATATACTTGGAACCATGGCACGCTGATATCATGGAT 382720 Query 78380 TTTTTGGAACTTCGTCTCAACCAGGGTGACGAGGAAGCTCGATGCAGGGATTTATTCACT 78439 || ||||| || ||| || || || | || ||||| | || ||||| ||| | Sbjct 382721 TTCTTGGACCTACGTAAAAATCACGGAGCTGAAGAAGCAAGGGCTAGAGATTTGTTCTAT 382780 Query 78440 GCTATGTGGATTCCGGATCTTTTTATGAAGAGAGTTGAGGAAGGAGGTAAATGGTCTCTT 78499 || | ||||| || ||||| || |||||||||||||||| | | | | ||| | ||| Sbjct 382781 GCATTATGGATACCTGATCTGTTCATGAAGAGAGTTGAGGCAAACGCTGACTGGACACTT 382840 Query 78500 TTCTGTCCAGAT-AAGACTAAGGGTCTTTCAGATGTATACGGGGAAGAATTCGAAAAATT 78558 | || |||||| || | | ||||| | ||||| | || || |||||||| | | Sbjct 382841 ATGTGCCCAGATGAATGCCGA-GGTCTATATGATGTTTGGGGTGACGAATTCGAGGCACT 382899 Query 78559 GTACACTAAATACGAAGAGGAAGGTCTCGCTATTAAGACAATTGATGCATCTGA-ACTAT 78617 ||||| ||||| |||| | || || | ||| || || || | || |||| Sbjct 382900 TTACACAAAATATGAAGCAGCGGGGCTAGGACGTAAAACCATACCAGC-CCAGACTCTAT 382958 Query 78618 GGAAAGCTATTATCAAAAGTCAAACAGAGACCGGCACCCCGTATATGCTATACAAAGACA 78677 || || || | |||| |||| || || |||| ||| | |||||||||||||| Sbjct 382959 GGTTTGCCATATTACAAAGCCAAATCGAAACAGGCAACCCATTCATGCTATACAAAGATG 383018 Query 78678 GCTGTAACAGAAAGTCTAACCAAAAGAACCTAGGTGTCATCAAAAGCTCTAACCTTTGCA 78737 ||| ||| || || |||||| |||| || || ||| ||| || ||||| || Sbjct 383019 CCTGCAACGCTAAATCAAACCAACAGAATCTTGGAACCATAAAATCGTCAAACCTGTGTT 383078 Query 78738 CAGAAATTCTGGAATACAC 78756 |||||| | | ||||| Sbjct 383079 GTGAAATTGTTCAGTACAC 383097 >seq207 Length=758373 Score = 129 bits (142), Expect = 8e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 171889 GGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAG 171948 || |||||||||||| | ||||| ||| | ||||| ||||| ||| |||| || ||| Sbjct 498953 GGTAAAACTATCACCTTAGAGGTGGAGCCCAGTGACACTATCGAAAACGTCAAGGCAAAG 499012 Query 171949 ATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAG 172008 || || || || || || ||||| || ||||||||||| | ||||| || ||||||||| Sbjct 499013 ATCCAGGACAAAGAGGGTATTCCCCCAGATCAGCAACGTTTGATTTTCGCCGGTAAACAG 499072 Query 172009 CTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGA 172052 || || ||||| ||||| ||| |||| |||||| | || || || Sbjct 499073 CTCGAGGATGGCCGTACACTCTCTGACTACAACATCCAGAAAGA 499116 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 171889 GGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAG 171948 || ||||| ||||| | ||||| || | ||||| ||||| || |||| || ||| Sbjct 499481 GGTAAAACCATCACATTGGAGGTAGAACCCAGTGACACCATCGAGAATGTCAAGGCAAAG 499540 Query 171949 ATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAG 172008 || || || || || || ||||| || ||||||||||| ||||| || || || || || Sbjct 499541 ATCCAGGACAAAGAGGGTATTCCCCCAGATCAGCAACGTCTTATCTTCGCGGGGAAGCAA 499600 Query 172009 CTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTT 172068 ||||||||||| ||||| ||| |||| |||||| |||| || || ||| || ||| | Sbjct 499601 CTTGAAGATGGCCGTACACTCTCTGACTACAACATTCAGAAAGAAAGTACCCTTCACTTG 499660 Query 172069 GTTCT 172073 || || Sbjct 499661 GTACT 499665 >seq12 Length=203243 Score = 102 bits (112), Expect = 1e-16 Identities = 337/513 (66%), Gaps = 22/513 (4%) Strand=Plus/Plus Query 198447 CGATTCAAGGATGTTGAGGGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATTGTTGAT 198506 || || ||||| |||| |||||| | ||||||| |||| | || |||| ||| Sbjct 177124 CGTTTTAAGGACGTTGCGGGTATGCATGAAGCTAAGCGTGAGATTAGCGAATTTGTGGAT 177183 Query 198507 TTTCTTAAAAACCCCGAAAAGTACTATGGA-AGT--GGTGCCCGAATCCC--ACGTGGTG 198561 ||||| |||||||| |||| | || | | | | ||||| || || | | || | Sbjct 177184 TTTCTAAAAAACCCT--AAAGCA-TACGAACACTACGGTGCAAAGATACCGAAAGGGGCG 177240 Query 198562 CTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTG 198621 | || | || || || ||||| |||||||| || | ||| ||| | || || | Sbjct 177241 TTGTTATGT--GGAGCACCTGGTACAGGTAAAACTCTATTGGCTAAAGCTGTTGCCGGCG 177298 Query 198622 AATCGAGTGTCCCCTTTC-TTCAGTGCTCCGCGGCGAGTTTCATCGAGATGTTCGTTGGT 198680 | | | ||| || ||| ||| | | |||| ||| ||||| |||| |||||| Sbjct 177299 AGGCAAATGTACCATTTTATTCCATATCTGGAAGCGACTTT-ATCGAAGTGTTTGTTGGT 177357 Query 198681 GTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCAACCATGTATC 198740 || || | || ||||| || ||||| ||| ||||| | | || |||| || Sbjct 177358 GTAGGCCCGTCACGTGTCCGCGACCTCTTCGAGAAAGCAAGGAAGAACGCACCAGCAATA 177417 Query 198741 ATCTTCATTGATGAGATTGACGCTGTTGGTAAGAAGCGTG------GTGGAACTACTACA 198794 | || ||||| |||||||| ||||| || |||||||| | |||| | | || Sbjct 177418 GTGTTTATTGACGAGATTGATGCTGTAGGCAAGAAGCGCGCGAAAGGTGGTTTTTCAGCA 177477 Query 198795 CCTGGTAATGATGAGCGTGAGCAGACGATTAACCAGCTTCTCACTGAGATGGATGGTTT- 198853 || |||||| ||||||||| | ||| |||| ||| | | ||||||||||| || Sbjct 177478 GGTGCTAATGACGAGCGTGAGAACACGCTTAATCAGATATTAGTGGAGATGGATGGGTTC 177537 Query 198854 -TGACAATGAGACTGGTATCGTGGTGATTGCTGCTACAAATAGGATTGATATCCTAGATG 198912 ||||| || ||| | | ||| |||| | ||| || || ||||||||| ||| Sbjct 177538 AAGACAAGTAG--CGGTGTAATTGTGCTTGCCGGTACTAACCGGGCTGATATCCTTGATC 177595 Query 198913 ATGCACTGCTTCGTCCCGGTCGATTCGACCGTA 198945 ||| || | ||||| || || || || |||| Sbjct 177596 CAGCATTGGTACGTCCAGGGCGCTTTGATCGTA 177628 >seq1 Length=768689 Score = 93.3 bits (102), Expect = 6e-14 Identities = 228/340 (67%), Gaps = 8/340 (2%) Strand=Plus/Plus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 ||||||| ||||||||| ||| | | || | || || | | || ||| | || Sbjct 617765 AAGATGAGGGAGACTGCCGAAGCACATCTCGGAAGAAAGGTAACCAAAGCTGTTATTACA 617824 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 ||||| || || |||| ||| || ||||| || || || ||||| || | | ||||| Sbjct 617825 GTACCAGCATATTTCAATGACTCCCAACGCCAAGCTACCAAGGATGCCGGTAAAATTGCT 617884 Query 195782 GGTCTAAACTGTCTT-AGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840 || || | ||| || || || ||||| ||||| || || ||||| | || | ||||| Sbjct 617885 GGACTTGA-TGTATTGAGGATCATCAACGAACCTACCGCAGCTGCTTTGGCGTTCGGTCT 617943 Query 195841 GGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 || ||||| | | ||| | | | || || | ||||| ||||| ||||| || Sbjct 617944 TGAAAAGAATGATG--GAA-AGACCATTGCCGTGTAC---GATCTGGGTGGAGGTACCTT 617997 Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960 ||| | || | | | || || ||| | ||||| ||||||||||| ||| | Sbjct 617998 CGATATTTCCATATTGGAGATACTTGGAGGTGTGTTCGAGGTAAAGGCTACCAATGGAAA 618057 Query 195961 TACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTC 196000 ||| || |||||||||||||||||| |||| | ||| Sbjct 618058 CACTTCACTTGGTGGTGAAGATTTCGATCAACGTATACTC 618097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657860631994800