Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20sp._20Xinjiang_20[genbank_20GCA_5F002095265.1_202017-04- 18] 215 sequences; 8,447,544 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1 134 1e-26 seq207 127 2e-24 >seq1 Length=768689 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 || ||||||| ||| || ||||||||||| || |||||| ||||| || || || | | Sbjct 684087 CCACCCCTCAGACGAAGAACCAAATGAAGAGTACTTTCTTTCTGAATATTGTAGTCAGAC 684028 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 ||| || ||| ||| || ||||| |||||||| | ||||| | ||||| ||||| || Sbjct 684027 AAT-GTACGACCATCCTCAAGTTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCCGGAGG 683969 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| |||||||| | || || ||| |||| | |||||| | || || Sbjct 683968 GATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTGTCACTGGGCTCCAC 683909 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || ||||| || |||||||| || || || |||||||| Sbjct 683908 CTCCAAAGTGATGGTTTTACCCGTTAAGGTCTTCACGAAAATCTGCAT 683861 >seq207 Length=758373 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||||||||| |||||||||||||| || |||||| || ||||| || || | Sbjct 499152 CCTCCCCTCAAACGAAGCACCAAATGAAGGGTACTTTCTTTCTGGATGTTGTAGTCAGAG 499093 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| ||||| ||||| || || | ||||| | ||||||||| || ||| Sbjct 499092 AGTGTACGGCCATCCTCGAGCTGTTTACCGGCGAAAATCAAACGTTGCTGATCTGGGGGA 499033 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||||||||| || | ||| ||||| |||| | ||||||| | || || Sbjct 499032 ATACCCTCTTTGTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTCACTGGGCTCCACC 498973 Query 29740 TCAAGAGTTATAGTTTTGCC 29759 || | || |||||||| || Sbjct 498972 TCTAAGGTGATAGTTTTACC 498953 Score = 113 bits (124), Expect = 3e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||||||||| || ||||||||||| ||| ||||| |||||||| || || | Sbjct 499416 CCTCCCCTCAAACGAAGTACCAAATGAAGGGTGCTCTCTTTCTGAATGTTGTAGTCAGAG 499357 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| || || || || || ||||| | ||||| | || || || || ||| Sbjct 499356 AGTGTACGACCGTCCTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGTTGGTCTGGGGGA 499297 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||||||||| || | ||| ||||| |||| | ||||||| ||||||| Sbjct 499296 ATACCCTCTTTGTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTCACTGGGTTCTACC 499237 Query 29740 TCAAGAGTTATAGTTTTGCC 29759 || | || || ||||| || Sbjct 499236 TCCAATGTGATGGTTTTACC 499217 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616 || ||||||||||| || || ||||| ||||| || |||||| |||||||| || || Sbjct 499683 TGACCTCCCCTCAAGCGAAGTACCAAGTGAAGGGTACTTTCTTTCTGAATGTTGTAGTCA 499624 Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676 | | || || ||| || ||||| || || || | || | | ||||||||| || Sbjct 499623 GAGAGTGTACGGCCATCTTCAAGTTGCTTCCCCGCGAAGATAAGACGTTGCTGATCTGGG 499564 Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 ||||||||||||||||| || | ||| |||||| | || | |||||| ||||| Sbjct 499563 GGAATACCCTCTTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGTTCT 499504 Query 29737 ACTTCAAGAGTTATAGTTTTGCC 29759 || || | || || ||||| || Sbjct 499503 ACCTCCAATGTGATGGTTTTACC 499481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218190605315