Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20sp._20Xinjiang_20[genbank_20GCA_5F002095265.1_202017-04- 18] 215 sequences; 8,447,544 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq19 273 2e-67 >seq19 Length=272159 Score = 273 bits (302), Expect = 2e-67 Identities = 962/1479 (65%), Gaps = 44/1479 (3%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 || || || ||||| ||||| || || || | ||| || |||||||| |||||||| || Sbjct 233454 GCTGTGACGTTAAGGATACCGTTAGCGTCGATATCGAAGGTGACTTCGATTTGAGGTACA 233395 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 ||||| ||||||||| || ||| | | || |||| || || || || || Sbjct 233394 CCTCTAGGAGCAGGTGCAATACCTGTAAGGTGGAACTTTCCTAGTAGGTTGTTGTCCTTT 233335 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTT---GATTATCTGAA 281602 || | |||||||| ||||| | |||||| ||| ||| || | || | | Sbjct 233334 GTCATAGCACGTTCACCTTCGAACACTTGGATG--AAC-ACACCTTCCTGGTTGTTTTCG 233278 Query 281603 TAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 | || || || | | | || || ||| || || ||||| || | |||| | | Sbjct 233277 TTGGTGGTGAAGATTTGTGTCTTCTTGGTAGGGATGGTAGTGTTCCTCTTGATAAGAACG 233218 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | |||||| || ||||| | ||| || || || || | ||||| | || | | Sbjct 233217 GTCATGACACCACCTGCAGTTTCGAGACCGAGTGAGAGTGGTGCAACATCGAGAAGCAAA 233158 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTG---ACCAACAAGAATAGCTGCTTGAATAGCAGCA 281779 | | ||||| | |||| ||| || |||| ||| || |||||||| | || ||| Sbjct 233157 AGCTCTTGAA-TCTTTC--CAGACTGGTCACCAGAAAGGATGGCTGCTTGTACGGCGGCA 233101 Query 281780 CCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAA 281839 || || ||||| |||||||| || || | | | ||| || || ||||| || Sbjct 233100 CCGTAAGCAACGGCTTCATCGGGGTTGATTGACCTGCTGGGTTCCTTTCCGTTGAAGAAC 233041 Query 281840 T--TTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATT 281896 | |||| ||| | || | ||| || ||||| | ||| ||||| || | ||||| | Sbjct 233040 TCCTTGATG--AGT-GACTGGATCTTGGGGATACGCGTTGAACCTCCTACAAGTACAACT 232984 Query 281897 TCATGCACCTGTGATTTATCCAGTT---TTGAATCCAATAAAACTTTTTCAACGGGTTCA 281953 || || | | || |||| | |||| || | | |||||||||| || Sbjct 232983 TCGTGTATTTTCCTCTTGTCCAATCCACTTGATTCTAGTG---CTTTTTCAACTGGAATG 232927 Query 281954 AGACCAGCTC-TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGAC 282012 || |||| | || || ||| | ||||||||| | || | | | ||| Sbjct 232926 AGTGT-GCTCCTGAATTTTTCACCACACATTTCTTCGAACCTGGCACGGCTGATAGTTGT 232868 Query 282013 ATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGA 282072 || || || || || ||| | | || |||| |||||| || | ||||| || || Sbjct 232867 GTTGTAGTCGATACCCTCGTAAAGTGAGTCAAGTTCAATAGTGGCCTGAGTTGAGCTGGA 232808 Query 282073 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCT--TTTGCTGAT 282130 ||| ||||||| || | |||||| |||||| || | || | ||| |||| || | Sbjct 232807 GAGTACACGTTTTGCCCTTTCACAGTGTGTCCTAAGACGGCGAAGGGCCCGTTTGTTGCT 232748 Query 282131 TG----ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAG 282186 | |||| || || | || ||| |||| || || || | |||||| Sbjct 232747 GGCGAGATTCTT-TCCATTGTTGATC--CTCATGAAGTCCCTTACGCAGTGTTCTACAAG 232691 Query 282187 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 282246 | || || || ||||||||||| | | || | ||| | ||||| |||||| ||| Sbjct 232690 TAGGTTGTCGAAGTCTTCACCTCCTAGGTGTGTGTCTCCCGCTGTAGCCTTTACTTCGAA 232631 Query 282247 AAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAAT 282306 | ||||| || | || | || | ||||| ||| || ||||| | ||| || || Sbjct 232630 GATACCATCCTCGATAGTAAGAATTGATACATCGAAGGTACCGCCACCAAGATCGAAGAT 232571 Query 282307 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 ||||| ||| |||||| | ||||| || ||||| || |||| ||| || || || Sbjct 232570 GAGTACGTTCTTTTCTTCCGATCCCTTTTTGTCGAGACCGTAGGCAATAGCGGCGGCGGT 232511 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 |||||| || || || | || |||||| || || ||||| | ||||||||||| || || Sbjct 232510 TGGTTCGTTGATGATACGCATAACATTGAGTCCTGCAATGGTACCTGCATCTTTGGTAGC 232451 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTT 282486 ||||| ||||| || || || ||||| || ||||| ||||||||||| | || ||| Sbjct 232450 CTGTCTCTGTGAGTCATTGAAGTATGCTGGTACAGTGATAACGGCATCCTTAACAGTTTT 232391 Query 282487 TCCAATATA-AGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTT 282545 ||| | || || | || ||| |||||||| | | | |||||| ||||||| || Sbjct 232390 TCCTAGGTACAGTTC-CGCAATTTCCTTCATTTTGATGAGTACCATTGACGAAATTTCTT 232332 Query 282546 CTGG--AGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACC 282603 |||| ||| | ||| || ||| | | |||||| | ||||| || Sbjct 232331 CTGGGTGGAAGCT--CTTCTTTTGTCCTTGGAAGGTTACTTCGATGGTAGGTTTGCCTCC 232274 Query 282604 AA---CATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATT 282660 || | || | || ||||||||||| | ||||||||| ||| || | | ||| | Sbjct 232273 AATACCGTTGACCACCTTAAATGGCCAGTGTTTCATATCATCTTGTACCGTGTTGTCGTC 232214 Query 282661 AAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGC 282720 ||| ||||||||| | || || ||||| |||| || || ||| || ||| | Sbjct 232213 AAACCTTCTACCAATAAGTCTCTTGGCATCGAAAACGGTGTTTTCTGGGTTCCTTGCTTC 232154 Query 282721 TTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGG 282780 ||| | ||||| ||||| ||||| ||| |||| || || || || | || || || || Sbjct 232153 TTGGTTCTTGGCGGCATCACCAATGAGACGTTCGGTGTCGGTGAAAGCGACGTAAGAGGG 232094 Query 282781 AGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACC 282840 || || | ||||| || ||||| | || || || || || | | ||||||| Sbjct 232093 TGTGGTTCTGTTACCCTGGTCATTAGGTATGATCTCGACATTGTTGTCCTTGTATACACC 232034 Query 282841 TACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 |||||| | || || || || || ||||| ||||| Sbjct 232033 TACACATGAGTAGGTGGTACCCAAGTCGATACCGATAGC 231995 Score = 86.0 bits (94), Expect = 5e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 86118 ACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGC 86177 |||||| |||| ||| || || |||||||| || || || | ||||| | || || Sbjct 232534 ACCGTAGGCAATAGCGGCGGCGGTTGGTTCGTTGATGATACGCATAACATTGAGTCCTGC 232475 Query 86178 AATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGT 86237 ||| || | | ||| || || |||||||||| |||||| || |||||||||||||| Sbjct 232474 AATGGTACCTGCATCTTTGGTAGCCTGTCTCTGTGAGTCATTGAAGTATGCTGGTACAGT 232415 Query 86238 AATAACTGCTTTATTAATAGGTTTT 86262 ||||| || | |||| || |||| Sbjct 232414 GATAACGGCATCCTTAACAGTTTTT 232390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740619844408590