Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20sp._20Xinjiang_20[genbank_20GCA_5F002095265.1_202017-04- 18] 215 sequences; 8,447,544 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq37 221 2e-52 >seq37 Length=429747 Score = 221 bits (244), Expect = 2e-52 Identities = 853/1312 (65%), Gaps = 50/1312 (4%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 |||||| || | ||||| ||||| || | || || || |||| || |||| || || Sbjct 383671 GTAGATATTGCTCGTGTAAGGTTCGAAAGACTCGTTGTTTCCCAGAATCTGTGACGTCGA 383612 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTG---ATGCG 110823 || || ||||| || |||| || || ||| || | | || | | ||| ||||| Sbjct 383611 TGCCGTGGGCATCGGGGCCAAGAATAGTGAGTTGCGCA-AGCCGTGT--TTGGCCATGCG 383555 Query 110824 TTCCTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTC-ACCTT-----CCCACATGTC 110877 ||||||| | |||||||| | || ||| | || ||| | |||| | ||| Sbjct 383554 ACGCTTGAGATCGTCCCAGTCCCAC---AGTTTGTTATCCACCGTAGCACCCCAGAGGTC 383498 Query 110878 AAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGC 110937 |||||| || || | || || || ||||| | | | || || |||| || || Sbjct 383497 AAACTGTAGTTTACCCTTCGAAGCAGGCGAACCTTGATAAGTCTCGTAGGGTCCATGTTT 383438 Query 110938 TTCAGCCAATTC-ACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAG 110996 ||||||||| | || | | ||||| || | | || |||||||| ||||||||| Sbjct 383437 CTCAGCCAATGAGATAGA-CTCATCCAGACATCCATAGTAGATGGTTTCGAAGATACGAC 383379 Query 110997 CATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCG 111056 || | ||||||||||| || || || || | ||| | || || || || | Sbjct 383378 GGTTTAATTCCTTGGCTTCTTCCGACTCGAAAGGGTACCTCATTAACATGAAAGTGTCAG 383319 Query 111057 CGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATT--AGACTTTCGCGCAGT 111114 | |||||||| || || | |||||| || || || || || ||||||| || | Sbjct 383318 CCAGACCTTGTACTCCAACACCAATTGGCCTATGGCGTTGGTTGGAGACTTTGGCC---T 383262 Query 111115 CTC-AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATT---TTTGGTAACAATCT 111170 || ||| ||||| |||| | |||||||| | ||||| || | || | ||| Sbjct 383261 CTGGAACCGGATAGTAATTCCGGTCAATGATCCTGTTTAAGTTGAATGTGATGACACG-- 383204 Query 111171 TTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTG 111230 || | |||| ||||| | |||| | || || ||||| | || |||||| | | Sbjct 383203 -TGCCACATCATATAGTTTCTTGAAATCGTATGTTCGTGTCTCCTTGTTCACATACATAG 383145 Query 111231 GAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAA 111290 | || || || |||||||||||||| || ||| || || | ||||||| | || Sbjct 383144 GCAGCGCTATAGATGCCAAATTGCAGACTGCCACTTCCTCTGGAGAAGTGTACTGAACAA 383085 Query 111291 TTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGT 111350 |||| ||| | ||| || || || || || | ||||| |||||| || || Sbjct 383084 TTTCACAACACAGGTTTGACGATTTTATGGTTCCAAGATTCTGTTGGTTTGATTTAGCGT 383025 Query 111351 TGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTG-AGAATA 111409 |||| ||||| ||||| |||||| | || | || || || | || | |||| | || Sbjct 383024 TGCAGGCATCTTTGTATAGCATGAATGGGTTGCCTGTTTCGATTTG-GCTTTGTAATATG 382966 Query 111410 GCCTTCCAAACA-TCGGCGGCTGGTACAATGGCGTT--GGCC-CGTCCCTCCGCCTCGTA 111465 || ||| | | || | ||||||| |||| || | || | ||| | || || || Sbjct 382965 GCAAACCATAGAGTCTG-GGCTGGT---ATGGTTTTACGTCCTAGCCCCGCTGCTTCATA 382910 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GT 111524 |||||||| || || || || || |||||| | || | |||||| | || || | Sbjct 382909 TTTTGTGTAAAGTGCCTCGAATTCGTCACCCCAAACATCATATAGACCTCG-GCATTCAT 382851 Query 111525 CTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 111584 |||| || | ||| | ||| | | | | ||||||| | ||||||||| || || || | Sbjct 382850 CTGGGCACATAAGTGTCCAGTCAGCGTTTGCCTCAACTCTCTTCATGAACAGATCAGGTA 382791 Query 111585 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTA 111644 |||| | | | || | ||||||| || || ||||| | || || || |||| Sbjct 382790 TCCATAATGCATAGAACAAATCTCTAGCCCTTGCTTCTTCAGCTCCGTGATTTTTACGTA 382731 Query 111645 ACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCT 111704 || | ||| ||||||||||| ||||||||||| || | || | || | || |||| Sbjct 382730 GGTCCAAGAAATCCATGATATCAGCGTGCCATGGTTCCAAGTATATGGCAAACGACCCCT 382671 Query 111705 TTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTT--AAATACGCGAAGCAT 111759 | || | ||| |||||| |||||| | || || || || |||||||| | ||| Sbjct 382670 TGCGTTTCCCACCACCTTGATCTACATATCTTGCAGTAGCATTGAAAATACGC--AACAT 382613 Query 111760 TGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC 111819 || | |||||| | || ||| ||||| || ||||| || | | || || | Sbjct 382612 AGGTACAATACCGTTGCTTTTACCGTTTGTACCGCGAATGTAAGCACCACTTGCCCTGAT 382553 Query 111820 ATCATGG-ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAA 111878 | ||| ||| || || ||||| ||||| || || ||| || || | || | Sbjct 382552 TTTGTGGCATG-CCAAACCTATACCTCCAGCACATTTGCTGATGAATGCGCATTGTGTCA 382494 Query 111879 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 111938 || || | || || | ||||| || || | | | | ||||||||| |||| Sbjct 382493 AGGTATCAAATATTCCAGCCAGGGAGTCATCTTTCATATCCAGTAAGAAGCAACTTGACA 382434 Query 111939 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 111990 | || ||||||||||| || | |||||| ||||| || || ||| |||| Sbjct 382433 TTTGTGGTCTTGGTGTCCCTGAGAAGAAGAGTGTTGGCGTCGCATGAGTGAA 382382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030312164000