Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20sp._20Xinjiang_20[genbank_20GCA_5F002095265.1_202017-04- 18] 215 sequences; 8,447,544 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq37 123 3e-23 seq180 87.8 2e-12 >seq37 Length=429747 Score = 123 bits (136), Expect = 3e-23 Identities = 428/652 (66%), Gaps = 17/652 (3%) Strand=Plus/Plus Query 104315 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGT 104374 |||| ||| || || ||||| |||||| | || ||||||||||| |||||||| ||| Sbjct 382382 TTCACTCATGCGACGCCAACACTCTTCTTCTCAGGGACACCAAGACCACAAATGTCAAGT 382441 Query 104375 TGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAG 104434 |||||| | | | | || || ||||| | || || | || || | || | Sbjct 382442 TGCTTCTTACTGGATATGAAAGATGACTCCCTGGCTGGAATATTTGATACCTTGACACAA 382501 Query 104435 TGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACAT-CCATGATGTGAGAGC 104493 || || ||| || || ||||| ||||| || || ||| ||| | | || || Sbjct 382502 TGCGCATTCATCAGCAAATGTGCTGGAGGTATAGGTTTGG-CATGCCACAAAATCAGGGC 382560 Query 104494 CAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCG 104553 | | || ||||| || ||||| ||| || | |||||| | || ||| | | Sbjct 382561 AAGTGGTGCTTACATTCGCGGTACAAACGGTAAAAGCAACGGTATTGTACCTATGTT--G 382618 Query 104554 CGTATTT--AACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCT 104608 ||||||| || || || || | |||||| |||||| ||| | || ||||| || Sbjct 382619 CGTATTTTCAATGCTACTGCAAGATATGTAGATCAAGGTGGTGGGAAACGCAAGGGGTCG 382678 Query 104609 ATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTC 104668 | || | || | || ||||||||||| ||||||||||| ||| | || | ||| Sbjct 382679 TTTGCCATATACTTGGAACCATGGCACGCTGATATCATGGATTTCTTGGACCTACGTAAA 382738 Query 104669 AACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGAT 104728 || || || | || || || || | ||| | |||| || | ||||| || ||| Sbjct 382739 AATCACGGAGCTGAAGAAGCAAGGGCTAGAGATTTGTTCTATGCATTATGGATACCTGAT 382798 Query 104729 CTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA-CAAGGC 104787 || ||||||||||||||||||| | | | ||| | || | || ||||| || || Sbjct 382799 CTGTTCATGAAGAGAGTTGAGGCAAACGCTGACTGGACACTTATGTGCCCAGATGAATGC 382858 Query 104788 ACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGA 104847 | ||||| | |||| |||||| || || || || ||||||||||| || || | Sbjct 382859 -CGAGGTCTATATGATGTTTGGGGTGACGAATTCGAGGCACTTTACACAAAATATGAAGC 382917 Query 104848 AGAAGGTCGGGCGAC-TGCGACGGTGCCAGCTGCCGA-TGTGTGGAAAGCTAT-TCTCAA 104904 || || | | ||| | || | ||||| | || | | ||| || || | ||| Sbjct 382918 AGCGGGGCTAG-GACGTAAAACCATACCAGC-CCAGACTCTATGGTTTGCCATATTACAA 382975 Query 104905 GTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAAC 104956 | |||| ||| || || | |||| |||||| |||||||| ||||| ||| Sbjct 382976 AGC-CAAATCGAAACAGGCAACCCATTCATGCTATACAAAGATGCCTGCAAC 383026 >seq180 Length=439454 Score = 87.8 bits (96), Expect = 2e-12 Identities = 201/297 (68%), Gaps = 12/297 (4%) Strand=Plus/Minus Query 9697 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT----TGATTTTCGCGAGCGA 9752 |||||| || |||| ||||| ||||| |||||||||||| | || | || |||| Sbjct 104913 TCCCACTGCGTCAAGTTCATCTATGAATACGATGCATGGTGACATTGTTCTGGCCAGCG- 104855 Query 9753 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9812 | || || || |||| | | | || || |||||||| ||||| ||| |||| | | Sbjct 104854 ---CGAAAAGCTCACGTATCCTCCTAGCACCTACACCAACGAACATTTCCTCAAATTCCG 104798 Query 9813 CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 | ||| ||| || || |||||| | ||| ||||||| |||| || | || | Sbjct 104797 AACCTGAAGCTTGTATAAATGGGACACCCGCTTCCCCCGCAACCGCTCTAGCCAACAGGG 104738 Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGG-AATCTTGGCGCCACTT 9931 |||| ||||| ||||| ||||| || || | || ||| |||| | || ||| | Sbjct 104737 TCTTGCCCGTCCCTGGTGGTCCCGCCAGTAGCACTCCCTTTGGCAATCGT-GCTCCAAGT 104679 Query 9932 CCAAAGTATCTCTCAGG-TTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTT 9987 | | || |||| || |||| ||| || ||||||| || || ||||| | ||| Sbjct 104678 TTATCGAATTTCTCTGGATTGC-GCAGATAAGCCACAATATCATCTAATTCCTTTTT 104623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259232486600