Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20sp._20Xinjiang_20[genbank_20GCA_5F002095265.1_202017-04- 18] 215 sequences; 8,447,544 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq19 354 2e-92 seq1 131 5e-25 seq207 122 3e-22 seq86 104 7e-17 seq37 84.2 7e-11 >seq19 Length=272159 Score = 354 bits (392), Expect = 2e-92 Identities = 983/1487 (66%), Gaps = 33/1487 (2%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| || ||||| || ||||| || || || ||||| | ||| | | | | | Sbjct 231995 GCTATCGGTATCGACTTGGGTACCACCTACTCATGTGTAGGTGTATACAAGGACAACAAT 232054 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || || | ||||| || ||||||||||| || || || ||||| || || ||| Sbjct 232055 GTCGAGATCATACCTAATGACCAGGGTAACAGAACCACACCCTCTTACGTCGCTTTCACC 232114 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || || ||| | ||||||||| | || || || |||| || || ||| |||| Sbjct 232115 GACACCGAACGTCTCATTGGTGATGCCGCCAAGAACCAAGAAGCAAGGAACCCAGAAAAC 232174 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || ||||| ||||| ||| |||||||||||||||| ||| ||||| | |||| | Sbjct 232175 ACCGTTTTCGATGCCAAGAGACTTATTGGTAGAAGGTTTGACGACAACACGGTACAAGAT 232234 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGAC--GGTGATAAACCAATTATTG 349496 ||| | ||||| | || |||| || || ||| | || | ||||| | || | Sbjct 232235 GATATGAAACACTGGCCATTTAAGGTGGT--CAACGGTATTGGAGGCAAACCTACCATCG 232292 Query 349497 AGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTT 349555 | || | |||| || || || | || |||| ||||||||||| |||||||| Sbjct 232293 AAGTAACCTTCCAAGGACAA-AAGAAGAGCTTCCACCCAGAAGAAATTTCGTCAATGGTA 232351 Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615 | | ||||||||||||||||| ||| || |||| |||| || | ||||| ||| Sbjct 232352 CTCATCAAAATGAAGGAAATTGCGGAACTGTACCTAGGAAAAACTGTTAAGGATGCCGTT 232411 Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675 || ||||||||||| || || ||||| | ||| | || || |||||||| || | | Sbjct 232412 ATCACTGTACCAGCATACTTCAATGACTCACAGAGACAGGCTACCAAAGATGCAGGTACC 232471 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 ||||| || | |||||| | | || || || ||||| || || || || ||||| || Sbjct 232472 ATTGCAGGACTCAATGTTATGCGTATCATCAACGAACCAACCGCCGCCGCTATTGCCTAC 232531 Query 349736 GGGCTTGATAAAATGAGTGACC--AAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTG 349793 || || || |||| || || | ||||||| || | || || || ||| | ||||| | Sbjct 232532 GGTCTCGACAAAA--AGGGATCGGAAGAAAAGAACGTACTCATCTTCGATCTTGGTGGCG 232589 Query 349794 GTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTG 349853 |||| || ||||||||| | || || | || || || || || ||||| || || || | Sbjct 232590 GTACCTTCGATGTATCAATTCTTACTATCGAGGATGGTATCTTCGAAGTAAAGGCTACAG 232649 Query 349854 CTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTA 349913 | || || ||||| || || || ||||| || || || | || || || | || | Sbjct 232650 CGGGAGACACACACCTAGGAGGTGAAGACTTCGACAACCTACTTGTAGAACACTGCGTAA 232709 Query 349914 AAGAATTTAAGCGTCAAGCTAAAATTGATA----TTGGAGATAATCCTA-GAGCAATGCG 349968 || || | | | | | | ||| || | | | | | | | | || | || Sbjct 232710 GGGACTTCATGAG--GATCAACAATGGAAAGAATCTCGCCAGCAACAAACGGGCCCTTCG 232767 Query 349969 TCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGT-TCCTTATCATCTACTACCCAAACCT 350027 || || || || |||||| | || || ||| | || || || | || || || Sbjct 232768 CCGTCTTAGGACACACTGTGAAAGGGCAAAACGTGTACTCTCCAGCT-CAACTCAGGCCA 232826 Query 350028 CTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTC 350087 |||||||| |||| || ||| || || | || | | || |||| | ||||| Sbjct 232827 CTATTGAACTTGACTCACTTTACGAGGGTATCGACTACAACACAACTATCAGCCGTGCCA 232886 Query 350088 GGTTTGAAGAATTATGT-ATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTA 350146 |||| |||||| | ||| || | || |||| ||| | ||| || ||||||| | Sbjct 232887 GGTTCGAAGAAATGTGTGGTGAAAAATTCAGGAGC-ACACTCATTCCAGTTGAAAAAGCA 232945 Query 350147 TTAAAAGATGCAA---AAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGT 350203 | ||| ||| | || ||| | | || | ||||| || | || || ||| Sbjct 232946 CT---AGAATCAAGTGGATTGGACAAGAGGAAAATACACGAAGTTGTACTTGTAGGAGGT 233002 Query 350204 TCTACACGTATTCCAAAAGTTCAACAGTTACT-ATC--TGAGTTTTTTAATGGCAAAGAA 350260 || || |||| ||| ||| || |||| ||| ||| ||||| || || || || ||| Sbjct 233003 TCAACGCGTA-TCCCCAAGATC--CAGTCACTCATCAAGGAGTTCTTCAACGGAAAGGAA 233059 Query 350261 CCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCT 350320 || || ||||| || || |||||||| ||||| || ||||| || || || ||| | Sbjct 233060 CCCAGCAGGTCAATCAACCCCGATGAAGCCGTTGCTTACGGTGCCGCCGTACAAGCAGCC 233119 Query 350321 ATTTTATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCA 350380 || | ||||| | || | || ||| | || || || || || ||||| | ||| Sbjct 233120 ATCCTTTCTGGTGACCAGTCTGGAAAGATTCAAGAGCTTTTGCTTCTCGATGTTGCACCA 233179 Query 350381 CTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGT 350440 || || || || | |||||| | |||| || ||||| |||||||| || || | | Sbjct 233180 CTCTCACTCGGTCTCGAAACTGCAGGTGGTGTCATGACCGTTCTTATCAAGAGGAACACT 233239 Query 350441 ACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTA 350500 || | ||||| || ||| | |||| || | || | | | || ||| || || Sbjct 233240 ACCATCCCTACCAAGAAGACACAAATCTTCACCACCAACGAAAACAACCAGGAAGGTGTG 233299 Query 350501 ACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAA 350560 || ||||| || ||||||||||||||| || || || || || ||| ||| | Sbjct 233300 TTCATCCAAGTGTTCGAAGGTGAACGTGCTATGACAAAGGACAACAACCTACTAGGAAAG 233359 Query 350561 TTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTC 350620 || ||| | | ||| |||| |||||||| || ||||| || |||||| | ||| Sbjct 233360 TTCCACCTTACAGGTATTGCACCTGCTCCTAGAGGTGTACCTCAAATCGAAGTCACCTTC 233419 Query 350621 GATATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAAATC 350667 ||||| || | || ||||| | || || || ||| | || || || Sbjct 233420 GATATCGACGCTAACGGTATCCTTAACGTCACAGCAATGGACAAGTC 233466 >seq1 Length=768689 Score = 131 bits (144), Expect = 5e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 |||||||| | | | ||||| | |||||||||| ||||| |||||||| || ||| Sbjct 684090 ATACCACCCCTCAGACGAAGAACCAAATGAAGAGTACTTTCTTTCTGAATATTGTAGTCA 684031 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || ||||| || ||||| |||||||| || ||||| || || | ||| ||||| || ||| Sbjct 684030 GACAATGTACGACCATCCTCAAGTTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCCGGA 683971 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 || || || || || || || || || || || ||||| ||||| | ||| || || Sbjct 683970 GGGATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTGTCACTGGGCTCC 683911 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | || | || || || |||| || || || ||||||||||| Sbjct 683910 ACCTCCAAAGTGATGGTTTTACCCGTTAAGGTCTTCACGAAAATCTGCAT 683861 >seq207 Length=758373 Score = 122 bits (134), Expect = 3e-22 Identities = 129/169 (76%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| ||||| ||| ||||| ||||| || || ||||| | ||| || |||||||||| Sbjct 499660 CAAG-TGAAGGGTACTTTCTTTCTGAATGTTGTAGTCAGAGAGTGTACGGCCATCTTCAA 499602 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 |||| || || || ||||| |||||||||||||| || ||||| || ||||| ||||| | Sbjct 499601 GTTGCTTCCCCGCGAAGATAAGACGTTGCTGATCTGGGGGAATACCCTCTTTGTCCTGGA 499542 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGT 140698 | || || || ||||| || || | ||| ||||| || || | ||| Sbjct 499541 TCTTTGCCTTGACATTCTCGATGGTGTCACTGGGTTCTACCTCCAATGT 499493 Score = 98.7 bits (108), Expect = 3e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| || | || | || || | |||||| ||| ||||| || || || | Sbjct 499160 TTTGCATACCTCCCCTCAAACGAAGCACCAAATGAAGGGTACTTTCTTTCTGGATGTTGT 499101 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| | ||| || ||||| || || ||||| || || || || | ||||||||||| Sbjct 499100 AGTCAGAGAGTGTACGGCCATCCTCGAGCTGTTTACCGGCGAAAATCAAACGTTGCTGAT 499041 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAAT 140671 | || ||||| || ||||| ||||| || || || || || || || || Sbjct 499040 CTGGGGGAATACCCTCTTTGTCCTGGATCTTTGCCTTGACGTTTTCGAT 498992 >seq86 Length=883075 Score = 104 bits (114), Expect = 7e-17 Identities = 323/494 (65%), Gaps = 6/494 (1%) Strand=Plus/Plus Query 67768 TTTATTGATAAAGAATTTATCCATTTCTCAACATACGATAATGAACGTTCTATTCCAAAT 67827 |||||| | || ||| | ||||| || || | ||| |||| |||||| ||| ||| Sbjct 116248 TTTATTAACAAGGAACTGATCCAATTTTCCATATATGATACAGAACGTAGTATCCCATCA 116307 Query 67828 TTAATTGATGGTTTTAAAATTAGTTTAAGAAAAATTATCTATTCGGCATTTAAGAAACGT 67887 | |||| |||| ||| || | || ||| ||| |||| || || | ||||| Sbjct 116308 GTGGTTGACGGTTGGAAACC-AGGTCAACGTAAAGTAT-TATTTGG-ATGTCTCAAACGC 116364 Query 67888 --CTAACTAG-TGAAATTAAAGTTGCACAATTTAGTGGTTATGTTTCAGAACATTCAGGC 67944 || ||| |||| ||| || |||||| ||| ||||||||| | |||||||| | Sbjct 116365 AACTTGGTAGGTGAATGTAAGGTCGCACAACTTACAGGTTATGTTGCTGAACATTCGGCT 116424 Query 67945 TATCATCACGGTGAAGCTAGTTTAAATTCATCAATTGTAGGTTTAGCTCAGAATTTTGTT 68004 || || ||||| || ||| ||| | | |||| | | | || || || ||||| Sbjct 116425 TACCACCACGGCGAGGCTTCGTTACAACAAACAATCATCAATATGGCCCAAAACTTTGTC 116484 Query 68005 GGATCAAATAATATTAATTTACTAGAACCAAAAGGTCAATTTGGAACTAGATTACTTGGA 68064 || ||||| ||||| || | ||||||| ||||| ||||| | | | || Sbjct 116485 GGTTCAAACAATATCAACGTTTTAGAACCGTGTGGTCAGTTTGGTAGTCGTAAGGAGGGT 116544 Query 68065 GGAAAAGATGCTGCATCTGAAAGATATATATTTACACATCTAAATACTTTAACTAGACTT 68124 || |||||||| | | | | | ||||| ||||| | || || | | ||||| ||| Sbjct 116545 GGTAAAGATGCATCTGCCGCACGTTATATTTTTACGAAGCTGAACCCAATTACTAGGCTT 116604 Query 68125 ATCTTTAGACAAGAAGATGATAATATTCTTGAATATTTAGAAGATGATGGTGATAAAGTT 68184 || ||| | |||||||||||||| | | || | | || || || | | || Sbjct 116605 ATATTTGTGGAGGAAGATGATAATATATTGCAGTACCAAAACGAAGAGGGCCAAACTATT 116664 Query 68185 GAGCCAATCTATTATGTTCCTATTATTCCTATGATTTTAGTAAATGGTTCAAAAGGGATT 68244 ||||| | |||||| | |||| ||| || ||| | | || || ||||| | || || Sbjct 116665 GAGCCGCTGTATTATATCCCTACTATACCCATGGTACTTGTCAACGGTTCTGAGGGTATA 116724 Query 68245 GGCACTGGATTTAG 68258 || || || ||||| Sbjct 116725 GGTACGGGTTTTAG 116738 >seq37 Length=429747 Score = 84.2 bits (92), Expect = 7e-11 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 423765 AGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CCTC 423822 |||| ||||| ||||| |||| |||| | |||||| ||| |||| ||| ||| || |||| Sbjct 12754 AGCACGGATGGCCGAGCGGTCAAAGGCGCCAGACTCAAGTTCTGGTGGGCGAGAGTCCTC 12695 Query 423823 GTGGGTTCAAACCCCACTCCGTGCA 423847 ||||||||||| |||||| |||||| Sbjct 12694 GTGGGTTCAAATCCCACTTCGTGCA 12670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515250225947645