Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20sp._20Xinjiang_20[genbank_20GCA_5F002095265.1_202017-04- 18] 215 sequences; 8,447,544 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq37 120 3e-22 seq207 82.4 8e-11 >seq37 Length=429747 Score = 120 bits (132), Expect = 3e-22 Identities = 340/518 (66%), Gaps = 6/518 (1%) Strand=Plus/Plus Query 19167 AGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACG 19226 |||| || |||| ||||| || || | ||||| || |||||||| || || ||| | Sbjct 382353 AGACTTATCACCTCATGAGTCAAAAATATTTCACTCATGCGACGCCAACACTCTTCTTCT 382412 Query 19227 CCGGTACGAACAAC-CCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 | || || | ||| || || ||||| || || ||| || ||| |||||| |||||| | Sbjct 382413 CAGGGAC-ACCAAGACCACAAATGTCAAGTTGCTTCTTACTGGATATGAAAGATGACTCC 382471 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 | | || || | || || | | | ||||| |||| ||| || | || ||| Sbjct 382472 CTGGCTGGAATATTTGATACCTTGACACAATGCGCATTCATCAGCAAATGTGCTGGAGGT 382531 Query 19346 ATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGA 19405 || || | ||| || ||| || | |||||| | || || || ||||| Sbjct 382532 ATAGGTTTGGCATGCCACAAAATCAGGGCAAGTGGTGCTTACATTCGCGGTACAAACGGT 382591 Query 19406 GTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAAC 19465 | | ||||||| || || ||| | || | ||||| || || || || || | Sbjct 382592 AAAAGCAACGGTATTGTACCTATGTTGCGTATTTTCAATGCTACTGCAAGATATGTAGAT 382651 Query 19466 CAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGAC 19525 || || || || ||||||||||| ||||| ||||| ||| | || ||||||||||| || Sbjct 382652 CAAGGTGGTGGGAAACGCAAGGGGTCGTTTGCCATATACTTGGAACCATGGCACGCTGAT 382711 Query 19526 GTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGC--GCTGTCGCG 19583 ||||||||||| | || || || || || || | || ||| || | | | | Sbjct 382712 ATCATGGATTTCTTGGACCTACGTAAAAATCACGGAGCTGA--AGAAGCAAGGGCTAGAG 382769 Query 19584 ACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAG 19643 | | ||| || || ||||| || || || |||||| ||| |||||| ||| | Sbjct 382770 ATTTGTTCTATGCATTATGGATACCTGATCTGTTCATGAAGAGAGTTGAGGCAAACGCTG 382829 Query 19644 AATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTA 19681 | ||| || |||||||| | ||||||| || ||| Sbjct 382830 ACTGGACACTTATGTGCCCAGATGAATGCCGAGGTCTA 382867 Score = 116 bits (128), Expect = 4e-21 Identities = 300/452 (66%), Gaps = 10/452 (2%) Strand=Plus/Plus Query 20370 GGCTT-CGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATG 20428 ||||| |||||||| | || | || || ||||| || || ||||| | ||||| || Sbjct 383570 GGCTTGCGCAACTCACTATTCTTGGCCCCGATGCCCACGGCATCGACGTCACAGATTCTG 383629 Query 20429 GGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCC 20488 || ||||||||| ||||||| || ||||||| ||| ||||||| || ||| || Sbjct 383630 GGAAACAACGAGTCTTTCGAACCTTACACGAGCAATATCTACTATCGGCGTGTGCTTAGT 383689 Query 20489 GGTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGACTTGCAGAAGATCGATATGTGG 20548 || ||||| || | || ||| ||| || | |||||| | | | | | | ||| Sbjct 383690 GGCGAGTTTTTCGTTGTGAACCCTCACTTGCTGCGCGACCTTGTGGACCTGGGACTCTGG 383749 Query 20549 TCGCCCAAAATTAAGAATGAAATTGTCCGAGCCGGCG--GGAGCGT--CCAGGCATTG-- 20602 | || ||| | || || | || | ||| | | | | ||||| Sbjct 383750 GATGAGAGCATGAAGGAAAAACTTATT---GCTTACAATGGATCCTTACGACACATTGAG 383806 Query 20603 GATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGC 20662 | |||||| ||| || ||||||| |||||| ||| |||||||| ||| ||| |||| | Sbjct 383807 GGTATCCCTCAGCACATCAAGGATCTTTACAAGACGGTATGGGAGATCAAACAAAAGACC 383866 Query 20663 ATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTC 20722 || ||||||||||| || || || || | | ||| |||||||| || ||||| || | Sbjct 383867 ATTATCGACATGGCTGCTGACCGAGGAGTGTTCATTGACCAGTCGCAATCGCTAAACATT 383926 Query 20723 TTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAG 20782 | | ||||| | || | | | || || | |||||| | ||||| ||| | ||| Sbjct 383927 TACCTGGAGCAACCTACGTTCGGTAAACTTACTAGCATGCACTTTTACGGATGGAAGAAG 383986 Query 20783 GGGCTCAAGACGGGCATGTACTATCTGCGGAC 20814 || || ||||| || || ||| |||| || Sbjct 383987 GGTCTTAAGACCGGTGCTTATTATTTGCGTAC 384018 Score = 113 bits (124), Expect = 5e-20 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || |||||||| || || ||||| |||||||||||||||||||| | |||||| || Sbjct 384018 GTACGCAAATAATAAGCACCGGTCTTAAGACCCTTCTTCCATCCGTAAAAGTGCATGCTA 383959 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | || || | | | || | ||||| | | ||||| ||||| || |||||||| ||| Sbjct 383958 GTAAGTTTACCGAACGTAGGTTGCTCCAGGTAAATGTTTAGCGATTGCGACTGGTCAATG 383899 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369 || | || ||||| || ||||||||||| | | |||||| |||||||| | ||| Sbjct 383898 AACACTCCTCGGTCAGCAGCCATGTCGATAATGGTCTTTTGTTTGATCTCCCATACCGTC 383839 Query 78370 CGGTAAA 78376 ||||| Sbjct 383838 TTGTAAA 383832 >seq207 Length=758373 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 60030 TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089 |||||||||||||||||||| || || ||||| || ||||| ||||| | ||| |||| Sbjct 378022 TTCTGTGCTATTTTCTGGCTGAAGAAACGTGGTCTTATGCCAGGCCTTACCTTCAGCAAC 378081 Query 60090 GAGCTGATTTCCCGGGACGAGGGCCTCCAT 60119 ||||||||||| | || || || || ||| Sbjct 378082 GAGCTGATTTCAAGAGATGAAGGACTTCAT 378111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523325839600