Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1398 134 3e-26 seq49863 89.7 1e-12 >seq1398 Length=10803 Score = 134 bits (148), Expect = 3e-26 Identities = 450/692 (65%), Gaps = 29/692 (4%) Strand=Plus/Plus Query 318995 TGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGAT 319054 |||| || |||| |||||| ||||| ||| || | | || ||| ||| || || | Sbjct 5211 TGTCCTCTCCGGTGGCATAGCGCCACATGATGTATTCGGCAGGAGTCCAGTCGAGGTGGT 5270 Query 319055 CCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCC 319114 ||||||||||||||| || ||||| || ||||| |||| ||| | || || || |||| Sbjct 5271 TCTCGATGTGGTGGAAGGCGTGCTGGGCAACGTAGGCAATACGGAGGTTGGGGTGTTTCC 5330 Query 319115 AAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCC 319174 | || | ||| ||||| ||||| | || ||||| ||| ||||| ||| || | Sbjct 5331 ACACGTTTCCGGAGGTGGGCTCCATCTCACCAGTGAGGCACTTGATGAGAGTGGACTTTC 5390 Query 319175 CCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATAC---CTGGGCATTCA 319231 | || ||||| ||| || || | | | |||| || || || | | | | Sbjct 5391 CAGCTCCGTTAGGGCCAACGACGGCCACACGGGAGGCGAGGGAGACGAACAGAGAGACCC 5450 Query 319232 CGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGTAGCTTCA 319291 ||||| | ||| | || || || || |||| ||||||| | | ||| | Sbjct 5451 CGTTG---AGGATCTGCTTGGTGGTGTTGGGGTAGGTGAAGGACACACCGTGCATCTTGA 5507 Query 319292 TGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG------GAACT 319345 ||||| |||||| | ||| ||| ||||||| |||||||| || ||||| Sbjct 5508 GAATGGCCTTGTCCTTGGTCTTGACACCGTCGAGGATACCGGGCTCAGGGAAGCCGAACT 5567 Query 319346 TC------CACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTC-GGGAC-G 319397 || | | ||| | |||| || ||||||| | || || ||||| | Sbjct 5568 TCTGAACGAAGGCGGTGGCAGAGGCGGTGAGCTCGTAGTAGGACTTTGCCTCAGGGACAG 5627 Query 319398 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 319457 | ||| |||| | | ||| || |||||||| | ||||||||| | | ||||| Sbjct 5628 C--CTTGACGAGAGCTGCCAGGTTGCCCTTGTAAGTTTTCAGCTTT---CTGGACTCGTA 5682 Query 319458 ATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCA 319517 ||||| || ||||| || ||||||||| ||||||||||| ||||| |||| | Sbjct 5683 GTGGATGATGTGAGTGCAGACCTTGTCGAGGAAGCCGGAGTCGTGAGACACCATCATGGC 5742 Query 319518 CGAAACGTCCTTAAGGTTGATCAGGTA-TTCAATC-AACCACCTCACGTTAGACACAGAA 319575 | |||| ||| || | ||| | ||| || | ||| ||||| ||| Sbjct 5743 TGTCACGTTCTTCTGGGAGCACAGCCAGTTC--TCGAGCCATGCTACGTTCTTGACATCC 5800 Query 319576 AGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCA 319635 | |||||||| ||||| || || | || | | || || | ||||| || || ||| Sbjct 5801 AAGTGGTTGGTAGGCTCATCGAGCAAGAGGATATCGGCCTTGATAAGCATGGCGCGCGCA 5860 Query 319636 AGAGCGAGTTTCATTTTCCACCCTCCGGAAAG 319667 || ||||| ||||| |||||||||||||| || Sbjct 5861 AGGGCGAGCTTCATCTTCCACCCTCCGGAGAG 5892 >seq49863 Length=10164 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 61078 CTCGAATTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAA 61137 ||||||| | ||| ||||| || || ||| | |||||||| || || || | || || Sbjct 10058 CTCGAATCTATCAGGCATCCACTTCCGAATTATATGGAAAGGTACAGGAGGTGCCCCAGT 9999 Query 61138 CAGAAAGGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACT 61197 |||| | || || |||||||||||||| || |||| || |||||| | || || || | Sbjct 9998 CAGAGACCACCCCTTTTTATCCTCGTAGTCCCTATGCCGTGGCAAAAATGTATGCCTATT 9939 Query 61198 GGATTTGTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCA 61257 ||||| ||| || | || | ||||| ||||||| || ||| |||| || | Sbjct 9938 GGATTACCGTAAACTATAGGGAAGCCTATGGTATGTTTGCCTGCAACGGAATTTTATTTA 9879 Query 61258 ATCACGA 61264 |||| || Sbjct 9878 ATCATGA 9872 Score = 84.2 bits (92), Expect = 5e-11 Identities = 325/500 (65%), Gaps = 18/500 (4%) Strand=Plus/Plus Query 150621 TTCCTAATCAGAACCGGGAATACATGTCCATTTTGTAGGTCATAACGGTCGTTTGGGCCA 150680 || ||||||| | || | |||||| |||| || ||| || || || || ||| Sbjct 8757 TTTCTAATCAATGCAGGTAGTACATGAGACTTTTCCAGATCAAAATTATCATTGGGTCCA 8816 Query 150681 CTGAGGTTCGTCGGCATTACTGACACGAAATTACAACCGAATTGTTTTCTGTAGGCGTCG 150740 || || || |||||||| || | |||||| |||| |||| | ||| || Sbjct 8817 TACAGATTAGTGGGCATTACGGAAATGAAATTGGTACCGTATTGCAAATTATAGCTCTCA 8876 Query 150741 CACATTTCGATTCCGGCTATCTTCGCTATCGCGTATGGTTTGTTAGTAGGTTCGAGAAAC 150800 || | || || || || || || ||||| ||||| || | || || ||| || | Sbjct 8877 CATAGTTTAATACCTGCAATTTTTGCTATGGCGTAAGGCTCATTGGTGTATTCCAGCACA 8936 Query 150801 CCGGTCATCAGGTATTCTTCTTTGATGGGGTTTGGGGATTC--TTTCGGGTATATACAGC 150858 |||||| || || || || || || || | |||| || ||| || || || || Sbjct 8937 TCGGTCAGAAGATACTCCTCCTTCATTGGCT--GGGGGCTCGATTTTGGATAAATGCATG 8994 Query 150859 TACTCCCGAGGAAAACGAGTTTTTTCAC---ATTGA-ATGTTTTAGAAGCGTGGATAACG 150914 |||| || | || | |||||||| || |||| || || || ||||| || Sbjct 8995 TACTTCCCAAAAACATTAGTTTTTTTACGCCATTGCGATAGCTTTGA----TGGATTACA 9050 Query 150915 TTCGTTTGAATCATCAGGTTGTCACGAATAAAATCACCACCAAAAGAATTGTTTGCATGA 150974 || |||| ||||||||||| ||| | ||||| ||| | | ||| || || | Sbjct 9051 TTATTTTGTATCATCAGGTTTTCATAGAGGAAATCCGCACGGTATGTATTATTAGCTAAA 9110 Query 150975 ATACCCCCTACTTTGGCAGCGGCGAGAAATACGTATTCTGGTGTTTCCATTTCGAAAAAT 151034 |||||||| || || || || || | ||| || |||| ||| ||||| || | ||||| Sbjct 9111 ATACCCCCGACCTTTGCGGCCGCCAAAAAAACCCATTCAGGTTTTTCCGTTGC-AAAAAA 9169 Query 151035 GCGGTC-AC-TTCTTGTTGATTGGTCAAATCGAGTTCTTTAGATGATCGGGTGATGATAT 151092 | | || || | || | || ||| | ||| || |||| | | || || || |||| Sbjct 9170 GAGTTCTACGGCCCTGCT-ATCGGTTAGATCAAGCTCTTCATGGGTTCTGGCAATTATAT 9228 Query 151093 TTGTATAACCCT--CTTTCT 151110 ||| ||| |||| |||||| Sbjct 9229 TTGAATACCCCTTGCTTTCT 9248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1055835856154700