Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq10895 284 1e-71 seq83140 114 2e-20 >seq10895 Length=16309 Score = 284 bits (314), Expect = 1e-71 Identities = 981/1519 (65%), Gaps = 47/1519 (3%) Strand=Plus/Minus Query 53518 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 53577 |||||| | ||||| | |||||| || || | ||| || || ||||| | | |||| || Sbjct 11538 AATAAAGGTATCTGCCAGTCCTTGGACTCCCAAACCTATTGGCCTATGGCGCATATTGGA 11479 Query 53578 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGAC 53637 |||| ||||| | || || ||||| |||| || | |||| ||||| || Sbjct 11478 ATTTTCCGCTTCCTTTACGGGGTAGTAATTCCTATCAATGACCCTATTAAGGTTCTTGGT 11419 Query 53638 AA---------TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTAT 53688 | | || |||| || ||||| | |||||||| || || | Sbjct 11418 CACCCGTTTTGTAACCTTGAACAATTCCTTGTG---------ATCAAATTTGCCCCCTTT 11368 Query 53689 TACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 53748 ||||||||| | || ||||| |||| |||||||| ||||| |||| | | Sbjct 11367 AACAAACATGGGAAGAGCTATAGAGGCCAAGTTACAAACCGCTACTTCATCGGGGGAGGT 11308 Query 53749 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 53808 ||||| | |||||| || |||||||| | | ||| || || || || | ||||| Sbjct 11307 ATATTCCAATATCTCGGTACAAAGATTGGAAGATCGGATAGTACCCAAGTTCTTCTGATT 11248 Query 53809 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGA 53868 || || || ||||||||||||||| || | ||||| || || ||||||||||| Sbjct 11247 GCTTTTACGATTGGCCGCATCCTTATAAAGCATATAGGGCGTTCCCGTCTCAATCTGGGA 11188 Query 53869 TTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTC-TC 53927 ||| | || || ||| | | | ||||||| | |||| | ||| || || Sbjct 11187 TTCCAATATTTTTTCCCATAAATCCCTGGCCTTTACCGT---TTTGCGACCCTTATCCTC 11131 Query 53928 TTTCGTATAGTGTA--TACAATCGTTCAAACTCGTCTCCCCAAACATTGTC--CAATCCA 53983 | | ||| | | || | | |||||| || || | | ||| |||||| Sbjct 11130 TGCCTCATATTTCAAATATAGTTTTTCAAATTCCTCACTGTGAT--TTGAAAACAATCCT 11073 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 54043 |||||||||| || ||||| || | ||| ||| | | ||| ||| || ||||| || Sbjct 11072 GGACATTCATTGGGGCACATTAAGGTCCAATCTTCATTGGCCTCCACGCGCTTCATGAAC 11013 Query 54044 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 54103 | ||| |||||||| | || || ||||| | || | ||| || ||||| Sbjct 11012 AAATCTGGAATCCACATGGCGTAGAACAGATCACGGGCACGCATTTCTTCCTTTCCGTGG 10953 Query 54104 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTC 54163 ||||| || | || | || | | |||||| | |||||| || || | || |||| | Sbjct 10952 TTCTTCTTCAATTCCAAAAAGTCAAAAATATCCGCATGCCAAGGCTCTACATAAATGG-C 10894 Query 54164 ATAACT-CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 54222 | |||| || || || ||||| ||||| | ||| | || |||| |||| | || Sbjct 10893 AAAACTTCCTTTTCGCTTCCCGCCTCCTTGATCAACGTAGCGTGCCGTGTCATTAAATAC 10834 Query 54223 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACT 54282 || | ||| || | |||||||||||| | ||||||||| |||| ||||| ||| | Sbjct 10833 CCTTAGCATAGGGACAATACCATTGGAAGTACCATTGGTACCGGCTATATATGATCCCGT 10774 Query 54283 GGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCA 54342 || |||| ||| ||| || || || || ||||| || || |||||| ||| Sbjct 10773 AGCCCGAACATTGTGAATGGAAAGTCCGATTCCCCCCGCAGATTGGGAGATTTTCGCGGT 10714 Query 54343 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 54402 | || || || || || || || || ||||| || ||| ||||| | ||| || || Sbjct 10713 CTGCTTCAAGGTGTCGTAAATACCATCGATACTGTCGTCCTTCATGGCCAATAGGAAGCA 10654 Query 54403 GCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458 | ||||| || || || ||||| | || || | |||||| | || || | Sbjct 10653 GGAGGACATCTG----CGGCTTGGGCGTTCCGGAGTTGAAGAGGGTAGGTGTTGCATGGG 10598 Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGA- 54517 | || |||||| || | || | || || || || || ||||| |||| |||| | Sbjct 10597 TGAAATATTTTTTTGACATCAGCTCATAGGTTTCTATGGCAGAGTCCATAT--CATTTAA 10540 Query 54518 -TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 54576 || ||||| || || || ||||| ||||| ||||| || | ||| | ||||| ||| Sbjct 10539 GTGGATTCCAACCGCAACGCGCATCAACATATGCTGGGGCCGTTCGGCTATCTTCCCGTT 10480 Query 54577 TATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 54636 | || || | |||||| ||||| || || || || || || | |||| ||| || Sbjct 10479 CAGCTTAAGGAGATAGGATCGCTCCAAGGTCTTGAAGCCGAAGTAATCGTATCCAAAATC 10420 Query 54637 TCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGT 54696 || | ||| || ||| || | ||||| ||| || || | || ||| | || | Sbjct 10419 ACGATTGTATATGATAGTCGAATCCAGTTTTTCCGAATTTTCGGAAATTACCT-TATAGA 10361 Query 54697 AAT-ACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAAT 54755 | | |||| || ||| | | ||| || || | ||||| | ||| | | |||| Sbjct 10360 CCTCATCGGAAAGAAGCGGGGCTTTTTTACCCGTTCTGGGATTTATATACTCGTACAAAT 10301 Query 54756 CCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTC 54815 ||||||| || ||| |||||| || | || |||| ||| || |||| || | Sbjct 10300 CCTTCATGGTCTCGGAAAAGGATTTTTTGGTATTCTTATGTAAATTGGAAACGGAAATAC 10241 Query 54816 TAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTG 54875 |||||| | | |||||||||||||| || || || || || ||||| | Sbjct 10240 GAGCGGCCAATTTTGCATAATCCGGATGCGTAGTGGTCATGGTAGCAGCCTGCTCGGCGG 10181 Query 54876 TCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 54935 || | ||||||| || || || || |||| ||| | ||| | || ||| ||||| Sbjct 10180 CCAAATTGTCCAACTCCGAAGTGGTAACACCATCATAAAGTCCCTCTATTACCCGCATAG 10121 Query 54936 CTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAG 54995 | | ||| || || |||| | || ||| | ||||||||||| |||||| | | | Sbjct 10120 CCACTTTTATGGGGTCTACCAGTTC---GTTGAGGCCATAACATAGTTTTCTGACCCTTG 10064 Query 54996 ATGTGATTTTATCAAACAT 55014 ||||| ||||| ||||| Sbjct 10063 CCGTGATCTTATCGAACAT 10045 Score = 205 bits (226), Expect = 1e-47 Identities = 583/889 (66%), Gaps = 19/889 (2%) Strand=Plus/Minus Query 23843 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 23902 ||||||||| || || | |||||| || ||||| ||||| || | || ||| || | Sbjct 9831 TTTTTGGTACTCGGAGACCCTTTTTTCAAAGAAATTGGTTTTCCCCTGTAGTGAAATCAT 9772 Query 23903 TTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAAT 23962 ||||| ||||| ||||||||||| |||||| | | ||| | || | |||| | Sbjct 9771 ATCCATAAAATCAAATGGATTGGTAGAATTATATACTTTTTCACATTGAAGTTCA---AC 9715 Query 23963 CAAT---CTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTAT 24019 |||| || || | ||||| |||| |||| |||||| || ||||| || || Sbjct 9714 CAATAGCCTGTCCGTTACAAATTCCAAATATTGGGTCATCAGTTTTGCGTTCATCCCAAT 9655 Query 24020 AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 24079 || | || || || | | |||| ||| || |||| ||| | || | ||||| Sbjct 9654 GAGGCTTACAGGTAGGGATTCCGTAATAAACTCGCGTTCTATATCCAAGGCATTTGTTAG 9595 Query 24080 AATAGATCTTACTGTTTCTT----CACTCGGTGGATACAATAAATGTTTAAACATCAAAC 24135 ||| | | | | || | ||| || || ||| || || || | Sbjct 9594 AATCTGTGTAATCCTCTCCTTGGGCACCTTGTTGAC-CAAGTGGTGGTTGTGCAAATGAA 9536 Query 24136 ATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTC 24195 ||| ||||||| || | || || || | ||| ||||| |||||||| || | | Sbjct 9535 CGGCGTAATCGCAATGCATGCCTTCATCACGGGAAATCAATTCATTGGAAAAAGTCAACC 9476 Query 24196 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAA 24255 ||||||||| || | || || | |||||| ||||| ||| | || |||||||||| Sbjct 9475 CGGGCATTAACCCTCTTTTCTTCAACCAAAAAATGGAACAAAAAGCCCCGGAAAAGAAAA 9416 Query 24256 TTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCC 24315 | ||||| || || |||||||| || | || ||| || ||| | | ||| |||| Sbjct 9415 TCCCTTCCACAGCGGCAAAGGCGATCAATCGTTCGGCAAAACTTGGGGAATCA---ATCC 9359 Query 24316 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 24375 | | | |||||||| ||||| || || | || | |||| ||||| | ||| | Sbjct 9358 ATCTAAGCGCCCAATCCGCCTTTTTCTTGATGGCTGGAAAGTTCTCAATAGCCTGAAAAA 9299 Query 24376 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 24435 | ||||||||| || || || ||||| || || ||||| || || |||| | Sbjct 9298 GGATGTTTTTTTCCTTTTCGTCCTTTACATAGGTGTCTATCAACAGGGAGTAGGTTTCGG 9239 Query 24436 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 24495 |||| ||||| || || || || |||||||| || | | ||||| | | || | Sbjct 9238 AATGGATGTTCTCCATCATTATCTGGAATCCGTAAAAGAACTTGGCCTCCGAATATTGGA 9179 Query 24496 CTTCTAT-ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 24554 |||| | ||||||| | | || ||||||||||| || || || || || |||||| Sbjct 9178 CTTCGTTCACAAAATTCT-CGGCCAAATTTTCATTTACAATCCCATCGGATGCGGCAAAA 9120 Query 24555 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA---TTCCAATCA 24611 || ||||| | |||||||||||| || |||||| ||| |||| ||||| ||| Sbjct 9119 AAGGCCAAGATATGTTTTATAAAGTAACGTTCGTCGTCACTTAATTTATCGTTCCAGTCA 9060 Query 24612 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 24671 | ||| | | || ||| | || || | |||||||| | ||||| ||||| Sbjct 9059 GATAAATCCTGATGTAAATCAATCTCCTCGGCGGTCCAAAAACAGGCCTCACATTTTTTG 9000 Query 24672 TACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 24720 ||| | ||| | || |||| || ||| || || || |||||||||| Sbjct 8999 TACCATTCCCACAAATCGTGATGTTCAATGGGGAATATTACAAATCTAT 8951 >seq83140 Length=1468 Score = 114 bits (126), Expect = 2e-20 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 53951 TCAAACTCGTCTCCCCAAACATTGTC-CAATCCAGGACATTCATCCGGACACATCAACGA 54009 |||||||| || ||||| |||| || ||||| || || | ||| |||||||||| Sbjct 1193 TCAAACTCCTCCCCCCAG-CATTCAGACAGCCCAGGGCACTCGTTCGGGCACATCAACGT 1251 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| |||||||| |||||||||||| |||| || || ||||||||||| ||| | | || Sbjct 1252 CCAGTCTCCGTCCTCCTTCACTCGTCTCATGAACAGGTCAGGAATCCAGAGACCGAAGAA 1311 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 ||||| || | ||| || ||||| || || ||||| | ||| ||||| | | Sbjct 1312 GAGATCCCTCGCTCTGTGCTCCTCCTTGCCGTGGTTCTTCCGCAAATCCAGGAAGTCAAG 1371 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGG 54161 | || || ||||| || |||| ||| |||| Sbjct 1372 GAGGTCTGAGTGCCAGGGCTCCAGGTAGATGG 1403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592632937231200