Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq23761 104 2e-17 seq56386 96.9 4e-15 seq62509 95.1 1e-14 >seq23761 Length=1799 Score = 104 bits (114), Expect = 2e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 116754 ACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTT 116813 ||||| |||| || ||||| || |||||||||||| ||||| |||| | | | Sbjct 1401 ACGTGTTGGCTTTCTTCGCGGCTTCCGACGGCATCGTGCTGGAGAACCTGGCGGCCAGGT 1460 Query 116814 TCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 || ||||||||| ||| || | ||||| || ||||||||| || ||||||||||||| Sbjct 1461 TCCTTCAGGAGGTCCAGATGCCTGAGGCCAGGGCCTTCTACGGATTCCAGATCGCCATGG 1520 Query 116874 AGAACGTGCACTCGGAAATGTA 116895 ||||| | ||||| ||| |||| Sbjct 1521 AGAACATCCACTCTGAAGTGTA 1542 >seq56386 Length=466 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 40789 GAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAG 40848 ||||| || ||| | || ||||| || ||||||| || ||||| ||||| || || | | Sbjct 466 GAGGGAATTCCCCCTGATCAGCAGCGCCTCATCTTTGCAGGCAAGCAGCTTGAGGATGGG 407 Query 40849 CGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTG 40908 | || || |||||||||||||||||||| |||| || ||||| ||| | ||| || Sbjct 406 AGAACGCTGTCTGACTACAACATCCAGAAGGAATCCACTCTCCATCTGGTGCTCCGCCTG 347 Query 40909 AGGGGCGGCGGCT 40921 || |||||| ||| Sbjct 346 AGAGGCGGCTGCT 334 >seq62509 Length=1081 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/135 (76%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||| ||||| |||| ||||| ||||| ||||| || || ||||| ||| | || | Sbjct 726 TCAAAGAAAAGATTCAGGACAAGGAGGGGATCCCGGCAGATCAGCAGCGATTGATATTTT 785 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCAC--CCTCAACGACTACAACATCCAGAAGGAGGC 40883 |||| |||||||| || |||| ||| || | ||| |||||||||||||||| |||| | Sbjct 786 CGGGAAAACAGCTCGAGGACGGGCGAACTGCATCA--GACTACAACATCCAGAGGGAGAC 843 Query 40884 CACGCTGCATCTAGT 40898 || ||||| || || Sbjct 844 GACCCTGCACCTTGT 858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514274481194400