Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq10895 118 1e-21 >seq10895 Length=16309 Score = 118 bits (130), Expect = 1e-21 Identities = 549/858 (64%), Gaps = 30/858 (3%) Strand=Plus/Minus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 |||||| || || || || |||||||||||||| ||||| || | || |||||| | Sbjct 9831 TTTTTGGTACTCGGAGACCCTTTTTTCAAAGAAATTGGTTTTCCCCTGTAGTGAAATCAT 9772 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAA 16062 |||||||||||||| ||||| | ||| ||| ||| || ||| | ||| | ||| Sbjct 9771 ATCCATAAAATCAAATGGATTGGTAGAATTATATACTTTTTCACATTGAAGTTCAACCAA 9712 Query 16063 TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAA 16122 || || |||| |||||||| | ||| || |||| | | |||||| || || | Sbjct 9711 TAGCCTGTCCGTTACAAATTCCAAATATTGGGTCATCAGTTTTGCGTTCATCCCAATGAG 9652 Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT 16182 | ||||| | | ||| || | ||| | |||||||| | || | || | Sbjct 9651 GCTTACAGGTAGGGATTCCGTAATAAACTCGCGTTCTATATCCAAGGCAT--TTGTTAGA 9594 Query 16183 ATCTCT-TACTACACT-ATTTAACGGAGGGTTTAATAAGTG-----TTTAAACATTATAC 16235 |||| | || | | || || | ||| | ||||| | | | || | || Sbjct 9593 ATCTGTGTAATCCTCTCCTTGGGCACCTTGTTGACCAAGTGGTGGTTGTGCAAATGA-AC 9535 Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295 || |||| ||||||| ||||| || | || || || || ||||| || | | Sbjct 9534 -GGCGTAATCGCAATGCATGCCTTCATCACGGGAAATCAATTCATTGGAAAAAGTCAACC 9476 Query 16296 CTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATA 16355 | ||||||| |||| ||| || | |||||| || | ||| | || |||||||| | Sbjct 9475 CGGGCATTAACCCTCTTTTCTTCAACCAAAAAATGGAACAAAAAGCCCCGGAAAAGAAAA 9416 Query 16356 TACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttcta 16415 | ||||| || |||||||| || | |||||| || | | | || || | Sbjct 9415 TCCCTTCCACAGCGGCAAAGGCGATCAATCGTTCGGCAAA------ACTTGGGGAATCAA 9362 Query 16416 tccattttttagcccaatttg-ctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474 ||||| | ||||||| | |||||| || | | | | |||||| || || | | Sbjct 9361 TCCATCTAAGCGCCCAATCCGCCTTTTTCTTGATGGCTG-GAAAGTTCTCAATAGCCTGA 9303 Query 16475 AATA-AATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533 || | || |||||| |||| | || | ||| || ||||| | | || | Sbjct 9302 AAAAGGATGTTTTTTTCCTTTTC-GTCCTTTACATAGGTGTCTATCAACAGGGAGTAGGT 9244 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593 ||| ||||| || |||||||| |||||| || || |||||| | | || || || Sbjct 9243 TTCGGAATGGATGTTCTCCATCATTATCTGGAATCCGTAAAAGAACTTGGCCTCCGAATA 9184 Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 ||| ||||| ||| | || || || ||||| || || || |||||| || || Sbjct 9183 TTGGACTTCGTTCACAAAATTCTCGGCCAAATTTTCATTTACAATCCCATCGGATGCGGC 9124 Query 16654 AAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGT--TATCTGAAAGTTTTA----A 16707 |||||| || | || ||||| ||||| | ||||| | || || |||| Sbjct 9123 AAAAAAGGCCAAGATATGTTTTATAAAGTAACGTTCGTCGTCACTTAA---TTTATCGTT 9067 Query 16708 CCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGC 16767 ||||||||| ||||| | |||||| | ||| || | ||||||||| | || || Sbjct 9066 CCAGTCAGATAAATCCTGATGTAAATCAATCTCCTCGGCGGTCCAAAAACAGGCCTCACA 9007 Query 16768 CTTTTTATACATTTTCCA 16785 ||||| ||| || ||| Sbjct 9006 TTTTTTGTACCATTCCCA 8989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461663926434000