Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq10895 221 1e-52 seq9473 93.3 4e-14 seq21114 82.4 7e-11 >seq10895 Length=16309 Score = 221 bits (244), Expect = 1e-52 Identities = 839/1305 (64%), Gaps = 19/1305 (1%) Strand=Plus/Minus Query 23005 AACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGT 23064 ||||||| || | || || ||||| | || || || || || || || ||| || Sbjct 11367 AACAAACATGGGAAGAGCTATAGAGGCCAAGTTACAAACCGCTACTTCATCGGGGGAGGT 11308 Query 23065 GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTT 23124 || || | || |||||||| |||||| | | || || ||||| || |||| || Sbjct 11307 ATATTCCAATATCTCGGTACAAAGATTGGAAGATCGGATAGTACCCAAGTTCTTCTGATT 11248 Query 23125 GCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGA 23184 |||||| |||||| || |||||| || ||||| || ||||| |||||||| | ||| || Sbjct 11247 GCTTTTACGATTGGCCGCATCCTTATAAAGCATATAGGGCGTTCCCGTCTCAATCTGGGA 11188 Query 23185 CTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGC-CTTCTT 23243 || | || | ||| | | | || | || ||| || ||| | ||| Sbjct 11187 TTCCAATATTTTTTCCCATAAATCCCTGGCCTTTAC-CGTTTTGCGACCCTTATCCTCTG 11129 Query 23244 CCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCG 23303 |||| || || || | |||||||| ||| || | || || || Sbjct 11128 CCTCATATTTCAAATATAGTTTTTCAAATTCCTCACTGTGATTTGAAAACAATCCTGGAC 11069 Query 23304 ATTGCATCGGACACATGAGACTCCACATTGAGTCATTT---TCAACGCGTCTCATAAAAA 23360 ||| | || ||||| | |||| | ||||| || ||||| |||| || | Sbjct 11068 ATTCATTGGGGCACATTAAGGTCCAATCT---TCATTGGCCTCCACGCGCTTCATGAACA 11012 Query 23361 GATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGT 23420 ||| || ||||| | ||||||||||| || ||||| |||| || || || ||| || Sbjct 11011 AATCTGGAATCCACATGGCGTAGAACAGATCACGGGCACGCATTTCTTCCTTTCCGTGGT 10952 Query 23421 TCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAA 23480 |||| ||||| ||||||||||| || | ||||||||||| ||||| | |||| ||||| Sbjct 10951 TCTTCTTCAATTCCAAAAAGTCAAAAATATCCGCATGCCAAGGCTCTACATAAATGGCAA 10892 Query 23481 ACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTC 23540 | || || ||| ||| || ||||| ||||| || ||||||| || | || | Sbjct 10891 AACTTCCTTTTCGCTTCCCGCCTCCTTGATCAACGTAGCGTGCCGTGTCATTAAATACCC 10832 Query 23541 TTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTG 23600 ||||||| || || | ||| ||||| | || || || | | || || | | Sbjct 10831 TTAGCATAGGGACAATACCATTGGAAGTACCATTGGTACCGGCTATATATGATCCCGTAG 10772 Query 23601 CTCGAACGTTGTGAACGTGGAAA--CCTATGCCTCCGCCCGATTTCGATATCATCGCGCA 23658 | ||||| ||||||| |||||| || || || || | |||| || || ||||| Sbjct 10771 CCCGAACATTGTGAA--TGGAAAGTCCGATTCCCCCCGCAGATTGGGAGATTTTCGCGGT 10714 Query 23659 TTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACA 23718 || |||| |||||||| || || ||||| ||||| || || | || | | ||| || Sbjct 10713 CTGCTTCAAGGTGTCGTAAATACCATCGATACTGTCGTCCTTCATGGCCAATAGGAAGCA 10654 Query 23719 CGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAA 23778 || ||||| |||| |||||||| ||| ||| || || || | || || || || Sbjct 10653 GGAGGACATCTGCGGCTTGGGCGTTCCGGAGTTGAAGAGGGTAGGTGTTGCATGGGTGAA 10594 Query 23779 GTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTAT 23838 ||| || ||||| || | || || || ||||| | || || || | | ||| || Sbjct 10593 ATATTTTTTTGACATCAGCTCATAGGTTTCTATGGCAGAGTCCATATCATTTAAGTGGAT 10534 Query 23839 ACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTT 23898 || | || |||||||||| ||| | || || | ||| | | ||||| | || Sbjct 10533 TCCAACCGCAACGCGCATCAACATATGCTGGGGCCGTTCGGCTATCTTCCCGTTCAGCTT 10474 Query 23899 GAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATC 23958 | ||||| || || | || || || || || || || || || ||| ||||||| Sbjct 10473 AAGGAGATAGGATCGCTCCAAGGTCTTGAAGCCGAAGTAATCGTATCCAAAATCACGATT 10414 Query 23959 GTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGATGTTGTAATGAAAATT 24018 || | || | ||||| || | || ||| | | || | || || || Sbjct 10413 GTATATGATAGTCGAATCCAGTTTTTCCGAATTTTCGGAAATTACCTTATAGACCTCATC 10354 Query 24019 CGATATCATC--GGCGTTTTAACGCCGGTCTTTGGATCGATCGCTTCATACATATCGATA 24076 || | | | ||| |||| || ||| || | |||| || || |||| ||| | Sbjct 10353 GGAAAGAAGCGGGGCTTTTTTAC-CCGTTC-TGGGATTTATATACTCGTACAAATCCTTC 10296 Query 24077 ATGACATCGAAAAAAGAATCTTTAGTCTCCTTGTGCAAATTAGACACGGCCAATCTAGCC 24136 ||| ||| |||| || | ||| || | ||| || ||||| || |||| | | ||| Sbjct 10295 ATGGTCTCGGAAAAGGATTTTTTGGTATTCTTATGTAAATTGGAAACGGAAATACGAGCG 10236 Query 24137 GCAAGCAACGAATAGTCGGAATGATCGATGGTCATGGCCGCTGCCGTCTCGGCGATTAGA 24196 || | | ||| || | ||| ||||||||| || ||| ||||||| | | Sbjct 10235 GCCAATTTTGCATAATCCGGATGCGTAGTGGTCATGGTAGCAGCCTGCTCGGCGGCCAAA 10176 Query 24197 TTGTCCAATTCAGCGGTGGTCACGCCCGAATAGATTCCTTGATCGACGCGCACAGCTACG 24256 |||||||| || | ||||| || || ||| | ||| | || |||| ||| || Sbjct 10175 TTGTCCAACTCCGAAGTGGTAACACCATCATAAAGTCCCTCTATTACCCGCATAGCCACT 10116 Query 24257 GATGTGGGATTTACAAAATTCATGTCGAGTCCGTAACATAGTTTT 24301 | |||| | ||| | ||| || ||| || |||||||||||| Sbjct 10115 TTTATGGGGTCTAC-CAGTTC--GTTGAGGCCATAACATAGTTTT 10074 Score = 145 bits (160), Expect = 7e-30 Identities = 594/921 (64%), Gaps = 28/921 (3%) Strand=Plus/Plus Query 57517 TTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGA 57576 ||||||| || ||| ||||||||| || || || |||||| ||| || | ||| Sbjct 8933 TTTTGCAGGAAAATAAGGATAGATTTGTAATATTCCCCATTGAACATCACGATTTGTGGG 8992 Query 57577 ACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGG 57636 | ||||||||| || || | |||||||||| ||| || | || | | ||| Sbjct 8993 AATGGTACAAAAAATGTGAGGCCTGTTTTTGGACCGCCGAGGAGATTGATTTACATCAGG 9052 Query 57637 ATCTGAGCGATTGGGATTCCCTCAAAGAATCTGA-GA-GAA----ATTTTATTAAACACG 57690 || | || ||| | | ||| | ||| || ||| | ||||| ||||| Sbjct 9053 ATTTATCTGACTGGAA---CGATAAATTAAGTGACGACGAACGTTACTTTATAAAACATA 9109 Query 57691 TGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTT 57750 | ||||| ||||| |||||||||||||| ||||| || || ||||||| ||| | ||||| Sbjct 9110 TCTTGGCCTTTTTTGCCGCATCCGATGGGATTGTAAATGAAAATTTGGCCGAGA-ATTTT 9168 Query 57751 CACAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAA 57809 || ||||| ||| ||||||| | | |||||||||||| || | || || Sbjct 9169 GTGAACGAAGTCCAATATTCGGAGGCCAAGTTCTTTTACGGATTCCAGATAATGATGGAG 9228 Query 57810 AACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAG 57869 ||| | ||||| |||| || || || | || || || || || |||||| | | || Sbjct 9229 AACATCCATTCCGAAACCTACTCCCTGTTGATAGACACCTATGTAAAGGACGAAAAGGAA 9288 Query 57870 AAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGG 57929 ||| | || || | || || || | | || || ||| || ||||| || ||| Sbjct 9289 AAAAACATCCTTTTTCAGGCTATTGAGAACTTTCCAGCCATCAAGAAAAAGGCGGATTGG 9348 Query 57930 TCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCC 57989 | | | |||||| | | ||| | || ||||| | | ||||| || ||| Sbjct 9349 GCGCTTAGATGGAT-TGATTCCCCA-----AGTTTTGCCGAACGATTGATCGCCTTTGCC 9402 Query 57990 GCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCG-GCAATATTTTGGATGAAGAAACG 58048 || || ||||| || |||||||| || ||||| | | || |||||| |||||||| | Sbjct 9403 GCTGTGGAAGGGATTTTCTTTTCCGG-GGCTTTTTGTTCCATTTTTTGGTTGAAGAAAAG 9461 Query 58049 CGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCA 58108 || | |||||||| |||| ||| ||| || ||||| || || || || || | || Sbjct 9462 AGGGTTAATGCCCGGGTTGACTTTTTCCAATGAATTGATTTCCCGTGATGAAGGCATGCA 9521 Query 58109 TACTGATTTTG-CGTGCCTAATG---TACTCTCACATTGTCAATAAACCGACGCGGGATC 58164 | |||| | ||| | | || || ||| | ||||| || | | ||| Sbjct 9522 TTGCGATTACGCCGTTCAT-TTGCACAACCACCACTTGGTCAACAAGGTGCCCAAGGAGA 9580 Query 58165 GCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCC 58224 | || | ||| | || | || | | || ||| |||||| | || ||| ||| Sbjct 9581 GGATTACACAGATTCTAACAAATGCCTTGGATATAGAACGCGAGTTTATTACGGAATCCC 9640 Query 58225 TACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTG 58284 |||| || | | | || |||||| | ||||| | | || | || ||||| Sbjct 9641 TACCTGTAAGCCTCATTGGGATGAACGCAAAACTGATGACCCAATATTTGGAATTTGTAA 9700 Query 58285 CCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAAAATCCGTT 58342 | ||||| || ||| | ||||| || || | || || || | | ||||| || Sbjct 9701 CGGACAGGCTATTGGTTGAACTTCAATGTGAAAAAGT--ATATAATTCTACCAATCCATT 9758 Query 58343 TGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAG 58402 |||||||||| || |||| || || |||| || || || || || ||||||| || Sbjct 9759 TGATTTTATGGATATGATTTCACTACAGGGGAAAACCAATTTCTTTGAAAAAAGGGTCTC 9818 Query 58403 CGAATATCAAAAATACGGCGT 58423 ||| || |||||| ||| || Sbjct 9819 CGAGTACCAAAAAGCCGGTGT 9839 >seq9473 Length=1265 Score = 93.3 bits (102), Expect = 4e-14 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| |||||||| || || || |||||||| |||| || || || Sbjct 1095 AAAATGCAGATCTTCGTGAAGACTCTCACCGGAAAGACGATCACTCTCGATGTGGAGCCC 1154 Query 31250 TCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || ||| | |||| | ||||| || ||| | ||||||||| || | || ||||| Sbjct 1155 TCTGACTCTATCGAGAACGTCAAGGCAAAGA-TCCAGGACAAGGAGGGGATTCCCCCCGA 1213 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||||| || ||||| || || ||| | || ||| Sbjct 1214 TCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAGGAC 1253 >seq21114 Length=6667 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 22486 GCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGC 22545 |||| |||||| ||||| ||| | |||||||| ||| |||||| | ||||| || Sbjct 2159 GCGTCGGTAAACGTTGGTTGTCAGGGGTTCGAAGCTCTCACAGTTTCCGAAAATCTGCGC 2100 Query 22546 GGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTT 22600 ||||| || ||||||||||| || | || || |||||||||| |||| |||| Sbjct 2099 CGTCGACGCAGTCGGCATCGGGGCTACAAGGAGAGAGTTTCTCAGCCCGTCCTTT 2045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444949031584800